View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19495_low_13 (Length: 388)
Name: NF19495_low_13
Description: NF19495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19495_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 150 - 370
Target Start/End: Original strand, 32518637 - 32518855
Alignment:
| Q |
150 |
ggtggattgaggccatggccacctgaatttttggtacttcttagtaaatgtatatacataatgtaacatgatatttttagattatctaatcaaatattta |
249 |
Q |
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| T |
32518637 |
ggtggattgaggccatggccacctgaattttttgtacttcttagtacatgtatatacataatgtaacatgatatttttagattatctaatcaaatattta |
32518736 |
T |
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| Q |
250 |
gatagtgttatgtactcttcaaagacaaatgccatcgtatgatagttacataaccagagcctcttactagagtttgttgatacagacgactttaaataaa |
349 |
Q |
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| T |
32518737 |
ga--gtattatatactcttcaaagacaaatgccatcgtatgatagttacataaccagagcctcttactagagtttgttgatacagacgactttaaataaa |
32518834 |
T |
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| Q |
350 |
acattgtaccaatttagcttt |
370 |
Q |
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| T |
32518835 |
acattgtaccaatttagcttt |
32518855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 2 - 157
Target Start/End: Original strand, 32518430 - 32518576
Alignment:
| Q |
2 |
gcatgtccaagaatattatcgtgtatttgtcactaaagaaagaactgtattggaatgactcaacatatactcaaacaatgataaaccatgcatttggctt |
101 |
Q |
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||||| |||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32518430 |
gcatggccaacaagattatcgtgtatttgtcactaaagaa-gaactgtattggaatgactcaacatatactcaaacaatgataaaccatgcatttggctt |
32518528 |
T |
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| Q |
102 |
tatacatcatcgtctatttatcttgtcccaaagatccattggccccatggtggatt |
157 |
Q |
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| T |
32518529 |
tatacatcatcgtctatttatctt--------gatccattggccccatggtggatt |
32518576 |
T |
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