View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19495_low_16 (Length: 344)
Name: NF19495_low_16
Description: NF19495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19495_low_16 |
 | |
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| [»] scaffold0391 (1 HSPs) |
| | |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 9 - 326
Target Start/End: Complemental strand, 33992130 - 33991813
Alignment:
| Q |
9 |
gaagaatatataataataatagtcgtagtaccttggaattatgacattagccaaattcatgatgcctaatttgttgatgatttccattgcttgtattccg |
108 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33992130 |
gaagaaaatataataataatagtcgtagtaccttggtattatgacattagccaaattcatgatgcctaatttgttgatgatttccattgcttgtattccg |
33992031 |
T |
|
| Q |
109 |
ttgtcatctagtttatacagctctgcccacatatcaacgagagcagcgacaggaattctatggtcttcaggaaataaggctatgtccatcaagcactcca |
208 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
33992030 |
ttgtcatctagtttatacagctttgcccacatatcaacgagagcagcgacaggaattctatggtcttcaggaaataaggctatgtccatgaagcactcca |
33991931 |
T |
|
| Q |
209 |
tgattgtgggattatcttccaaaacatcaaagatcttttggaggcgagtaagtaattccgtattagaatcaagaatagaatgaccttgtgacaattcctt |
308 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
33991930 |
tgattgtaggattatcttccaaaacatcaaagatcttttggaggcgagtaagtaattcggtattagaatcaagaatagaatgaccttgtgacaattccat |
33991831 |
T |
|
| Q |
309 |
cactatcttacgccacaa |
326 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
33991830 |
cactatcttacgccacaa |
33991813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 326
Target Start/End: Complemental strand, 33975201 - 33974893
Alignment:
| Q |
18 |
ataataataatagtcgtagtaccttggaattatgacattagccaaattcatgatgcctaatttgttgatgatttccattgcttgtattccgttgtcatct |
117 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33975201 |
ataataataatagtcgtagtaccttggtattatgacattagccaaattcatgatgcctaatttgttgatgatttccattgcttgtattccgttgtcatct |
33975102 |
T |
|
| Q |
118 |
agtttatacagctctgcccacatatcaacgagagcagcgacaggaattctatggtcttcaggaaataaggctatgtccatcaagcactccatgattgtgg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||| | | |
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|
| T |
33975101 |
agtttatacagctctgcccacatatcaacgagagcagcgacaggaattctatggtcttcgggaaataaggctaggtccatgaagcactccatgatttttg |
33975002 |
T |
|
| Q |
218 |
gattatcttccaaaacatcaaagatcttttggaggcgagtaagtaattccgtattagaatcaagaatagaatgaccttgtgacaattccttcactatctt |
317 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| | ||||||||||||||| |
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|
| T |
33975001 |
gattatcttccaaaacatcgaagatcttttggaggcgagtaagtaattcggtattagaatcaagaattgaatgaccttgtgatagttccttcactatctt |
33974902 |
T |
|
| Q |
318 |
acgccacaa |
326 |
Q |
| |
|
| ||||||| |
|
|
| T |
33974901 |
atgccacaa |
33974893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 9 - 325
Target Start/End: Complemental strand, 33952610 - 33952294
Alignment:
| Q |
9 |
gaagaatatataataataatagtcgtagtaccttggaattatgacattagccaaattcatgatgcctaatttgttgatgatttccattgcttgtattccg |
108 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33952610 |
gaagaaaatataataataatagtcatagtaccttggtattatgacattagccaaattcatgatgcctaatttgttgatgatttccattgcttgtattccg |
33952511 |
T |
|
| Q |
109 |
ttgtcatctagtttatacagctctgcccacatatcaacgagagcagcgacaggaattctatggtcttcaggaaataaggctatgtccatcaagcactcca |
208 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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|
| T |
33952510 |
ttgtcatctagtctatacagctctgcccacatatcaacgagagcagcgacaggaattctatggtcttcgggaaataaggctatgtccatgaagcactcca |
33952411 |
T |
|
| Q |
209 |
tgattgtgggattatcttccaaaacatcaaagatcttttggaggcgagtaagtaattccgtattagaatcaagaatagaatgaccttgtgacaattcctt |
308 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| | ||| || |
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|
| T |
33952410 |
tgattgtgggattatcttctaaaacatcgaagatcttttggaggcgagtaagtaaatcagtattagaatcaagaatagaatgaccttgtgatagttcttt |
33952311 |
T |
|
| Q |
309 |
cactatcttacgccaca |
325 |
Q |
| |
|
| ||||||| ||||||| |
|
|
| T |
33952310 |
ccctatctttcgccaca |
33952294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 326
Target Start/End: Complemental strand, 33959901 - 33959593
Alignment:
| Q |
18 |
ataataataatagtcgtagtaccttggaattatgacattagccaaattcatgatgcctaatttgttgatgatttccattgcttgtattccgttgtcatct |
117 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33959901 |
ataataataatagtcgtagtaccttggtattatgacattagccaaattcatgatgcctaatttgttgatgatttccattgcttgtattccgttgtcatct |
33959802 |
T |
|
| Q |
118 |
agtttatacagctctgcccacatatcaacgagagcagcgacaggaattctatggtcttcaggaaataaggctatgtccatcaagcactccatgattgtgg |
217 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
33959801 |
agtctatacagctctgcccacatatcaacgagagcagcgacaggaattctatggtcttcgggaaataaggctatgtccatgaagcactccatgattgtag |
33959702 |
T |
|
| Q |
218 |
gattatcttccaaaacatcaaagatcttttggaggcgagtaagtaattccgtattagaatcaagaatagaatgaccttgtgacaattccttcactatctt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||| | ||| ||| ||||||| |
|
|
| T |
33959701 |
gattatcttccaaaacatcaaagatcttttggaggcgaataagtaatttggtattagaatcaagaagagaatgaccttgtgctagttctttccctatctt |
33959602 |
T |
|
| Q |
318 |
acgccacaa |
326 |
Q |
| |
|
|||||||| |
|
|
| T |
33959601 |
tcgccacaa |
33959593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 46 - 317
Target Start/End: Complemental strand, 33941979 - 33941708
Alignment:
| Q |
46 |
attatgacattagccaaattcatgatgcctaatttgttgatgatttccattgcttgtattccgttgtcatctagtttatacagctctgcccacatatcaa |
145 |
Q |
| |
|
|||| |||||||||||||||||| | ||||||||||||| || |||||||||| | | |||| ||||||||| ||||| ||||||||||||||||| |
|
|
| T |
33941979 |
attaagacattagccaaattcatagagtctaatttgttgattatgtccattgcttctttgccgtcatcatctagtccatacaactctgcccacatatcaa |
33941880 |
T |
|
| Q |
146 |
cgagagcagcgacaggaattctatggtcttcaggaaataaggctatgtccatcaagcactccatgattgtgggattatcttccaaaacatcaaagatctt |
245 |
Q |
| |
|
| ||||| ||||||||||| || |||||||||||||| || | |||||| |||||||| || | ||| |||||||||||||||||| || ||||| |
|
|
| T |
33941879 |
tcaaggcagcaacaggaattctctgatcttcaggaaataatgcaaggtccatgaagcactctttgctaatggcattatcttccaaaacatccaaaatctt |
33941780 |
T |
|
| Q |
246 |
ttggaggcgagtaagtaattccgtattagaatcaagaatagaatgaccttgtgacaattccttcactatctt |
317 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||| |||||| ||||| |||| | |||||| || ||||| |
|
|
| T |
33941779 |
ttggaggcgaataagtaattcagtattagaatcaagtatagaacgacctcgtgaaagttcctttacaatctt |
33941708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 74 - 317
Target Start/End: Complemental strand, 33913212 - 33912969
Alignment:
| Q |
74 |
ctaatttgttgatgatttccattgcttgtattccgttgtcatctagtttatacagctctgcccacatatcaacgagagcagcgacaggaattctatggtc |
173 |
Q |
| |
|
|||||||||||||||| ||||||||| ||| || | |||||||||||||||| ||| ||||||||||||| |||||||| || |||||||| |||| |
|
|
| T |
33913212 |
ctaatttgttgatgatggccattgcttctatgccttcatcatctagtttatacaactccgcccacatatcaatgagagcagaaacgggaattctcaggtc |
33913113 |
T |
|
| Q |
174 |
ttcaggaaataaggctatgtccatcaagcactccatgattgtgggattatcttccaaaacatcaaagatcttttggaggcgagtaagtaattccgtatta |
273 |
Q |
| |
|
|||||| ||||| || | |||||| ||||||||| || | | | |||||||||||||||||| |||| |||| ||||||||||||||||||| ||| || |
|
|
| T |
33913112 |
ttcagggaataatgcaaggtccatgaagcactccttgttaatagcattatcttccaaaacatccaagacctttcggaggcgagtaagtaattcagtacta |
33913013 |
T |
|
| Q |
274 |
gaatcaagaatagaatgaccttgtgacaattccttcactatctt |
317 |
Q |
| |
|
|||||||| |||||| ||||||| || | ||||||||| ||||| |
|
|
| T |
33913012 |
gaatcaagtatagaacgaccttgagaaagttccttcacaatctt |
33912969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 178; Significance: 6e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 9 - 326
Target Start/End: Original strand, 8278145 - 8278460
Alignment:
| Q |
9 |
gaagaatatataataataatagtcgtagtaccttggaattatgacattagccaaattcatgatgcctaatttgttgatgatttccattgcttgtattccg |
108 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
8278145 |
gaagaaaatataataataatagtcctagtaccttggtattatcacattagccaaattcatgaggcctaatttattgatgatttccattgcttctattccg |
8278244 |
T |
|
| Q |
109 |
ttgtcatctagtttatacagctctgcccacatatcaacgagagcagcgacaggaattctatggtcttcaggaaataaggctatgtccatcaagcact--- |
205 |
Q |
| |
|
|||||||||||| ||| ||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
8278245 |
ttgtcatctagtctattcagctctgc--------caacgagagcagcgacatgaattctatgggcttcaggaaataaggctatgtccatgaagcacttca |
8278336 |
T |
|
| Q |
206 |
----ccatgattgtgggattatcttccaaaacatcaaagatcttttggaggcgagtaagtaattccgtattagaatcaagaatagaatgaccttgtgaca |
301 |
Q |
| |
|
||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||| |||||||||||||||| |||| ||||| |||||| |
|
|
| T |
8278337 |
tgaatcatgattgtgggattatcttctaaaacatcgaatatcttttggaggcgagtaagtaattcggtattagaatcaagaacagaa-gacctcgtgaca |
8278435 |
T |
|
| Q |
302 |
attccttcactatcttacgccacaa |
326 |
Q |
| |
|
|||| ||||||||||||||||||| |
|
|
| T |
8278436 |
gttccgtcactatcttacgccacaa |
8278460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 36 - 317
Target Start/End: Complemental strand, 12174 - 11893
Alignment:
| Q |
36 |
gtaccttggaattatgacattagccaaattcatgatgcctaatttgttgatgatttccattgcttgtattccgttgtcatctagtttatacagctctgcc |
135 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||| |||||||||||| |||||||||||||||| |||||| ||||||||||||| ||||| || ||| |
|
|
| T |
12174 |
gtaccttgctattatgacattagccagattcatggagcctaatttgtttatgatttccattgcttctattccattgtcatctagttcatacaattcagcc |
12075 |
T |
|
| Q |
136 |
cacatatcaacgagagcagcgacaggaattctatggtcttcaggaaataaggctatgtccatcaagcactccatgattgtgggattatcttccaaaacat |
235 |
Q |
| |
|
||||||| || |||||||| |||||||||||||||||||| ||||||||||||| |||||| ||||||||| ||||| || |||||||||| ||||||| |
|
|
| T |
12074 |
cacatattaattagagcagcaacaggaattctatggtcttcgggaaataaggctaggtccatgaagcactccttgattatgagattatcttcgaaaacat |
11975 |
T |
|
| Q |
236 |
caaagatcttttggaggcgagtaagtaattccgtattagaatcaagaatagaatgaccttgtgacaattccttcactatctt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
11974 |
caaagatcttttggaggcgagtaagtaactcagtattagaatcaagtatagaatgaccttgtgacagttccttcactatctt |
11893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 184
Target Start/End: Original strand, 6738025 - 6738097
Alignment:
| Q |
112 |
tcatctagtttatacagctctgcccacatatcaacgagagcagcgacaggaattctatggtcttcaggaaata |
184 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||| ||| ||| ||||| || || |||||||||||||||| |
|
|
| T |
6738025 |
tcatctagattatacagttctgcccacatatcaatgaggacagtaacagggatcctctggtcttcaggaaata |
6738097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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