View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19495_low_17 (Length: 339)
Name: NF19495_low_17
Description: NF19495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19495_low_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 10324223 - 10324545
Alignment:
| Q |
1 |
acagggtagagcaggagaggagataatgaaagtgagtggaaggacaagagtggatcccacgcgccaccatatgattcgggtggagattcgagtgaaaatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
10324223 |
acagggtagagcaggagaggagataatgaaagtgagtggaaggacaagagtggatcccacgcgccaccatatgatttgggtggagattcgagtgaaaatg |
10324322 |
T |
|
| Q |
101 |
tctaagacctaatagatgagaaaacgacaagaagcatgggtccattattacaaaaagagtggaagtgggtgctacgtgtcaacttcctaactccatttgc |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
10324323 |
tctaagacctaacagatgagaaaacgacaagaagcatgggtccattattacaaaaagagtggaagtgggtgctacgtgtcaacttcctaactccatttcc |
10324422 |
T |
|
| Q |
201 |
taactttcaaaacgataa---catgcacacctaccccgacaatttttgtattcgtagcttcgttttcaatcttccatttgctcttactcgatcaacttga |
297 |
Q |
| |
|
|||| || | | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
10324423 |
taac--tccatttgctaactccatgcacacctaccccgacaatttttgtattcgtagcttcgttttcaatcttccatttgctcttgctcgatcaacttga |
10324520 |
T |
|
| Q |
298 |
tacttactatagttggagactttat |
322 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
10324521 |
tacttactatagttggagactttat |
10324545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University