View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19495_low_20 (Length: 315)

Name: NF19495_low_20
Description: NF19495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19495_low_20
NF19495_low_20
[»] chr5 (3 HSPs)
chr5 (1-192)||(472901-473092)
chr5 (146-196)||(6912112-6912162)
chr5 (146-195)||(9142044-9142093)
[»] chr4 (9 HSPs)
chr4 (199-315)||(41735987-41736103)
chr4 (146-194)||(30809507-30809555)
chr4 (146-196)||(25970805-25970855)
chr4 (125-193)||(47377579-47377647)
chr4 (137-192)||(25371538-25371593)
chr4 (146-192)||(45331455-45331501)
chr4 (146-191)||(10421583-10421628)
chr4 (146-179)||(36450741-36450774)
chr4 (117-177)||(23424486-23424546)
[»] chr7 (6 HSPs)
chr7 (1-179)||(44541565-44541743)
chr7 (123-179)||(24995865-24995921)
chr7 (123-179)||(24996662-24996718)
chr7 (146-185)||(46757431-46757470)
chr7 (146-192)||(27599211-27599257)
chr7 (146-192)||(27600097-27600143)
[»] chr2 (5 HSPs)
chr2 (61-193)||(23462404-23462536)
chr2 (139-179)||(2307068-2307108)
chr2 (146-185)||(36391674-36391713)
chr2 (146-185)||(41985894-41985933)
chr2 (137-194)||(45139690-45139747)
[»] chr1 (3 HSPs)
chr1 (61-192)||(36272464-36272595)
chr1 (61-192)||(6768035-6768166)
chr1 (151-192)||(11469772-11469813)
[»] chr6 (4 HSPs)
chr6 (61-179)||(8383935-8384053)
chr6 (61-164)||(23593857-23593960)
chr6 (61-112)||(8383236-8383287)
chr6 (125-192)||(24125972-24126039)
[»] chr3 (2 HSPs)
chr3 (146-185)||(45501296-45501335)
chr3 (144-194)||(41755497-41755547)
[»] chr8 (1 HSPs)
chr8 (123-179)||(34364659-34364715)


Alignment Details
Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 472901 - 473092
Alignment:
1 tgcaatttaggcagctggtggtgggtgagtgatttatgaaggagagacaaatgattgtgagttgaagacaaagttgggaaagatatagtgtgtccagatt 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| |||||  ||| |||||||||||||||||| ||||||||||||||| ||||||    
472901 tgcaatttaggcagctggtggtgggtgagtgagttatgaaggagagagaaatggctgttagttgaagacaaagttggaaaagatatagtgtgtgcagatt 473000  T
101 ataacaagatcagtggtcctgtttaatctgatggctaaaaaata-ttttctcatggtggaaaacaactcccctttcccatattaaatgtcacc 192  Q
    |||| ||||||||||||||| ||||||||||||||||||||||| |||||| ||||||| |||| ||| ||||||||||||||||||| ||||    
473001 ataataagatcagtggtcctctttaatctgatggctaaaaaatacttttct-atggtgggaaacgacttccctttcccatattaaatgccacc 473092  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 196
Target Start/End: Complemental strand, 6912162 - 6912112
Alignment:
146 tttctcatggtggaaaacaactcccctttcccatattaaatgtcacctata 196  Q
    |||| |||||||||||||||||| || ||||||| |||||| |||||||||    
6912162 tttcccatggtggaaaacaactctccattcccatgttaaatctcacctata 6912112  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 195
Target Start/End: Complemental strand, 9142093 - 9142044
Alignment:
146 tttctcatggtggaaaacaactcccctttcccatattaaatgtcacctat 195  Q
    |||| |||||||| |||||||| |||||||||||| |||||| |||||||    
9142093 tttcccatggtgggaaacaacttccctttcccatactaaatgccacctat 9142044  T

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Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 199 - 315
Target Start/End: Complemental strand, 41736103 - 41735987
Alignment:
199 tatttggtatttacactttattaaactcaaactttttgacagcaaaacttctataaaaccacaatattttatgtttatgtttaatttaggccaaatatca 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
41736103 tatttggtatttacactttattaaactcaaactttttgacagcaaaacttctataaaaccacaatattttatgtttatgtttaatttaggccaaatacca 41736004  T
299 tttttgatcattttagt 315  Q
     |||||||| |||||||    
41736003 cttttgatccttttagt 41735987  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 146 - 194
Target Start/End: Original strand, 30809507 - 30809555
Alignment:
146 tttctcatggtggaaaacaactcccctttcccatattaaatgtcaccta 194  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||||||    
30809507 tttctcatggtggaaaacaactcccctttcccattttaaatgccaccta 30809555  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 196
Target Start/End: Original strand, 25970805 - 25970855
Alignment:
146 tttctcatggtggaaaacaactcccctttcccatattaaatgtcacctata 196  Q
    ||||||||||||| ||||||||||| ||||||||| |||||| ||||||||    
25970805 tttctcatggtgggaaacaactcccttttcccatactaaatgccacctata 25970855  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 193
Target Start/End: Original strand, 47377579 - 47377647
Alignment:
125 aatctgatggctaaaaaatattttctcatggtggaaaacaactcccctttcccatattaaatgtcacct 193  Q
    ||||| |||||| ||||  | |||| |||||||| ||||||||||||||||||| |||||||| |||||    
47377579 aatctaatggctgaaaataactttcccatggtgggaaacaactcccctttcccaaattaaatggcacct 47377647  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 137 - 192
Target Start/End: Original strand, 25371538 - 25371593
Alignment:
137 aaaaaatattttctcatggtggaaaacaactcccctttcccatattaaatgtcacc 192  Q
    |||||||| ||||||||||||| ||| || || ||||||||| |||||||||||||    
25371538 aaaaaatactttctcatggtgggaaagaagtctcctttcccaaattaaatgtcacc 25371593  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 192
Target Start/End: Original strand, 45331455 - 45331501
Alignment:
146 tttctcatggtggaaaacaactcccctttcccatattaaatgtcacc 192  Q
    ||||||||||||| |||||||||||||||| ||| ||||||| ||||    
45331455 tttctcatggtgggaaacaactcccctttctcattttaaatgccacc 45331501  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 191
Target Start/End: Original strand, 10421583 - 10421628
Alignment:
146 tttctcatggtggaaaacaactcccctttcccatattaaatgtcac 191  Q
    |||| ||||||||||||||||| |||||||||| |||||| |||||    
10421583 tttcccatggtggaaaacaacttccctttcccaaattaaacgtcac 10421628  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 179
Target Start/End: Complemental strand, 36450774 - 36450741
Alignment:
146 tttctcatggtggaaaacaactcccctttcccat 179  Q
    |||| |||||||||||||||||||||||||||||    
36450774 tttcccatggtggaaaacaactcccctttcccat 36450741  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 177
Target Start/End: Complemental strand, 23424546 - 23424486
Alignment:
117 tcctgtttaatctgatggctaaaaaatattttctcatggtggaaaacaactcccctttccc 177  Q
    |||| |||||||| |||| | ||||| | ||||||||||||||||||||||| || |||||    
23424546 tcctctttaatctaatggttgaaaaaaactttctcatggtggaaaacaactctccattccc 23424486  T

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Target: chr7 (Bit Score: 84; Significance: 6e-40; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 44541565 - 44541743
Alignment:
1 tgcaatttaggcagctggtggtgggtgagtgatttatgaaggagagacaaatgattgtgag-ttgaagacaaagttgggaaagatatagtgtgtccagat 99  Q
    |||||||||||||||| ||||| ||||||||| |||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| || |     
44541565 tgcaatttaggcagcttgtggtaggtgagtgagttat-aaggagagagaaatgattgtgaggttgaagacaaagttgggaaagatatagtgtgtgcatac 44541663  T
100 tataacaagatcagtggtcctgtttaatctgatggctaaaaaatattttctcatggtggaaaacaactcccctttcccat 179  Q
    ||||| |||||  ||| | || |||||||||||||| |||||||| |||| |||||| | |||||| ||| |||||||||    
44541664 tataataagattggtgattctctttaatctgatggccaaaaaatactttcccatggtcggaaacaattccactttcccat 44541743  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 24995921 - 24995865
Alignment:
123 ttaatctgatggctaaaaaatattttctcatggtggaaaacaactcccctttcccat 179  Q
    ||||||| ||||  |||||||| |||| |||||||| ||||||||||||||||||||    
24995921 ttaatctaatggtcaaaaaatactttcccatggtgggaaacaactcccctttcccat 24995865  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 24996662 - 24996718
Alignment:
123 ttaatctgatggctaaaaaatattttctcatggtggaaaacaactcccctttcccat 179  Q
    ||||||| ||||  |||||||| |||| |||||||| ||||||||||||||||||||    
24996662 ttaatctaatggtcaaaaaatactttcccatggtgggaaacaactcccctttcccat 24996718  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 146 - 185
Target Start/End: Complemental strand, 46757470 - 46757431
Alignment:
146 tttctcatggtggaaaacaactcccctttcccatattaaa 185  Q
    |||||||||||||||||||||||| |||||||||| ||||    
46757470 tttctcatggtggaaaacaactcctctttcccatactaaa 46757431  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 192
Target Start/End: Complemental strand, 27599257 - 27599211
Alignment:
146 tttctcatggtggaaaacaactcccctttcccatattaaatgtcacc 192  Q
    |||| |||||||| |||||||||||||||||||| ||||||| ||||    
27599257 tttcccatggtgggaaacaactcccctttcccattttaaatgccacc 27599211  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 192
Target Start/End: Original strand, 27600097 - 27600143
Alignment:
146 tttctcatggtggaaaacaactcccctttcccatattaaatgtcacc 192  Q
    |||| |||||||| |||||||||||||||||||| ||||||| ||||    
27600097 tttcccatggtgggaaacaactcccctttcccattttaaatgccacc 27600143  T

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Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 61 - 193
Target Start/End: Complemental strand, 23462536 - 23462404
Alignment:
61 gttgaagacaaagttgggaaagatatagtgtgtccagattataacaagatcagtggtcctgtttaatctgatggctaaaaaatattttctcatggtggaa 160  Q
    |||||||||||||||| |||||||||||||||| |||| ||||| |||||||||| |||| |||| || |||||| |||||||| |||| |||||| |||    
23462536 gttgaagacaaagttgagaaagatatagtgtgtgcagactataataagatcagtgatcctctttagtcagatggccaaaaaatactttcccatggtagaa 23462437  T
161 aacaactcccctttcccatattaaatgtcacct 193  Q
    ||||| | ||| || ||||  ||||||||||||    
23462436 aacaagttcccatttccatgctaaatgtcacct 23462404  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 179
Target Start/End: Original strand, 2307068 - 2307108
Alignment:
139 aaaatattttctcatggtggaaaacaactcccctttcccat 179  Q
    |||||| |||||||||||||||||||||| |||||||||||    
2307068 aaaatactttctcatggtggaaaacaacttccctttcccat 2307108  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 146 - 185
Target Start/End: Original strand, 36391674 - 36391713
Alignment:
146 tttctcatggtggaaaacaactcccctttcccatattaaa 185  Q
    |||| |||||||||||||||||||||||||||||| ||||    
36391674 tttcccatggtggaaaacaactcccctttcccatactaaa 36391713  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 146 - 185
Target Start/End: Original strand, 41985894 - 41985933
Alignment:
146 tttctcatggtggaaaacaactcccctttcccatattaaa 185  Q
    |||||||||||||||||||||| |||||||||| ||||||    
41985894 tttctcatggtggaaaacaacttccctttcccaaattaaa 41985933  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 194
Target Start/End: Complemental strand, 45139747 - 45139690
Alignment:
137 aaaaaatattttctcatggtggaaaacaactcccctttcccatattaaatgtcaccta 194  Q
    ||||||||||||| |||| ||||||| || || ||||||||| |||||||| ||||||    
45139747 aaaaaatattttcccatgatggaaaagaagtctcctttcccaaattaaatgccaccta 45139690  T

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Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 61 - 192
Target Start/End: Original strand, 36272464 - 36272595
Alignment:
61 gttgaagacaaagttgggaaagatatagtgtgtccagattataacaagatcagtggtcctgtttaatctgatggctaaaaaatattttctcatggtggaa 160  Q
    |||||||||||||||| |||||||||||||||| |||| ||||| |||||||||  |||| ||||||| |||||| |||||||| |||| |||||||| |    
36272464 gttgaagacaaagttgagaaagatatagtgtgtgcagactataataagatcagtaatcctctttaatcagatggccaaaaaatactttcccatggtggga 36272563  T
161 aacaactcccctttcccatattaaatgtcacc 192  Q
    ||||| | ||| |||||||  |||||| ||||    
36272564 aacaagttcccattcccatgctaaatgccacc 36272595  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 61 - 192
Target Start/End: Original strand, 6768035 - 6768166
Alignment:
61 gttgaagacaaagttgggaaagatatagtgtgtccagattataacaagatcagtggtcctgtttaatctgatggctaaaaaatattttctcatggtggaa 160  Q
    |||||||||||||||| |||||||||| ||||| |||| ||||| ||||| |||  |||| ||||||| |||||| |||||||| |||| |||||||| |    
6768035 gttgaagacaaagttgagaaagatataatgtgtgcagactataataagattagtaatcctctttaatcagatggccaaaaaatactttcccatggtggga 6768134  T
161 aacaactcccctttcccatattaaatgtcacc 192  Q
    || || | ||| |||||||  |||||| ||||    
6768135 aataagttcccattcccatgctaaatgccacc 6768166  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 192
Target Start/End: Original strand, 11469772 - 11469813
Alignment:
151 catggtggaaaacaactcccctttcccatattaaatgtcacc 192  Q
    ||||||| ||||||||| |||||||||| |||||||||||||    
11469772 catggtgaaaaacaacttccctttcccaaattaaatgtcacc 11469813  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 61 - 179
Target Start/End: Original strand, 8383935 - 8384053
Alignment:
61 gttgaagacaaagttgggaaagatatagtgtgtccagattataacaagatcagtggtcctgtttaatctgatggctaaaaaatattttctcatggtggaa 160  Q
    ||||||||||||||||||||| ||||||||||| ||||  |||| |||||||  | |||| || ||||| |  |  ||||||||||||  |||||||| |    
8383935 gttgaagacaaagttgggaaatatatagtgtgtgcagaccataataagatcaacgatcctcttaaatctaaccgtcaaaaaatatttttccatggtggga 8384034  T
161 aacaactcccctttcccat 179  Q
    ||||||||| |||||||||    
8384035 aacaactccactttcccat 8384053  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 164
Target Start/End: Original strand, 23593857 - 23593960
Alignment:
61 gttgaagacaaagttgggaaagatatagtgtgtccagattataacaagatcagtggtcctgtttaatctgatggctaaaaaatattttctcatggtggaa 160  Q
    ||||||||||||||||||||||||||||||| | || | ||||| || ||||||| |||| |||| ||| |  || |||||||| |||| |||||||| |    
23593857 gttgaagacaaagttgggaaagatatagtgtatgcatactataataaaatcagtgatcctctttagtctaaccgccaaaaaatactttcccatggtggga 23593956  T
161 aaca 164  Q
    ||||    
23593957 aaca 23593960  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 8383287 - 8383236
Alignment:
61 gttgaagacaaagttgggaaagatatagtgtgtccagattataacaagatca 112  Q
    ||||| |||||||| ||||||||||||||||||  ||||||||| |||||||    
8383287 gttgatgacaaagtggggaaagatatagtgtgtgtagattataataagatca 8383236  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 192
Target Start/End: Complemental strand, 24126039 - 24125972
Alignment:
125 aatctgatggctaaaaaatattttctcatggtggaaaacaactcccctttcccatattaaatgtcacc 192  Q
    ||||| |||||| ||||  | |||| |||||||| ||||||||||||||||||| |||||||| ||||    
24126039 aatctaatggctgaaaataactttcccatggtgggaaacaactcccctttcccaaattaaatgccacc 24125972  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 146 - 185
Target Start/End: Original strand, 45501296 - 45501335
Alignment:
146 tttctcatggtggaaaacaactcccctttcccatattaaa 185  Q
    |||| |||||||||||||||||||||||||||||| ||||    
45501296 tttcccatggtggaaaacaactcccctttcccatactaaa 45501335  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 194
Target Start/End: Complemental strand, 41755547 - 41755497
Alignment:
144 attttctcatggtggaaaacaactcccctttcccatattaaatgtcaccta 194  Q
    ||||||||||||||| ||| ||||| ||||||||| |||||||| ||||||    
41755547 attttctcatggtgggaaaaaactctcctttcccaaattaaatgacaccta 41755497  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 34364659 - 34364715
Alignment:
123 ttaatctgatggctaaaaaatattttctcatggtggaaaacaactcccctttcccat 179  Q
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34364659 ttaatctaatggccaaaaaatatttttccatgatggaaaacaacttcccttttccat 34364715  T

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