View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19495_low_21 (Length: 311)

Name: NF19495_low_21
Description: NF19495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19495_low_21
NF19495_low_21
[»] chr3 (9 HSPs)
chr3 (1-230)||(21847250-21847483)
chr3 (1-230)||(21850340-21850573)
chr3 (1-57)||(11004365-11004421)
chr3 (1-57)||(9697727-9697783)
chr3 (1-57)||(43547864-43547920)
chr3 (1-57)||(9105414-9105470)
chr3 (138-199)||(54167161-54167223)
chr3 (138-199)||(54171741-54171803)
chr3 (6-58)||(43554713-43554765)
[»] chr8 (11 HSPs)
chr8 (5-199)||(30410148-30410343)
chr8 (5-205)||(30405634-30405834)
chr8 (231-311)||(41780404-41780484)
chr8 (1-99)||(28644701-28644799)
chr8 (1-57)||(33072057-33072113)
chr8 (167-235)||(38757331-38757400)
chr8 (1-57)||(38757130-38757186)
chr8 (1-57)||(42234656-42234712)
chr8 (151-199)||(30405628-30405677)
chr8 (173-213)||(28644850-28644890)
chr8 (126-174)||(38757253-38757301)
[»] chr5 (22 HSPs)
chr5 (1-99)||(30695432-30695530)
chr5 (1-99)||(40367531-40367630)
chr5 (173-230)||(30695594-30695651)
chr5 (21-99)||(40371669-40371747)
chr5 (1-57)||(36632441-36632497)
chr5 (1-57)||(26336767-26336823)
chr5 (135-201)||(12019007-12019074)
chr5 (1-57)||(19502448-19502504)
chr5 (135-199)||(7099192-7099257)
chr5 (135-199)||(7103761-7103826)
chr5 (135-199)||(16798944-16799009)
chr5 (135-201)||(12023576-12023643)
chr5 (188-233)||(40367383-40367427)
chr5 (135-230)||(37682298-37682400)
chr5 (1-47)||(43385091-43385138)
chr5 (1-43)||(20830304-20830346)
chr5 (188-230)||(40371549-40371590)
chr5 (156-230)||(16798989-16799067)
chr5 (1-57)||(32485947-32486003)
chr5 (135-173)||(16794383-16794421)
chr5 (162-232)||(7099105-7099179)
chr5 (126-199)||(40367429-40367504)
[»] chr7 (16 HSPs)
chr7 (1-230)||(27761536-27761767)
chr7 (1-102)||(27756985-27757087)
chr7 (1-99)||(47419498-47419596)
chr7 (1-102)||(22901295-22901396)
chr7 (151-230)||(27757172-27757252)
chr7 (156-235)||(22901499-22901578)
chr7 (1-57)||(7466485-7466541)
chr7 (1-51)||(733634-733684)
chr7 (135-199)||(7939901-7939966)
chr7 (135-199)||(7944454-7944519)
chr7 (126-198)||(27757111-27757185)
chr7 (151-230)||(7939808-7939891)
chr7 (151-230)||(7944385-7944468)
chr7 (126-199)||(22901420-22901495)
chr7 (188-230)||(47419376-47419417)
chr7 (165-205)||(22901497-22901537)
[»] chr2 (9 HSPs)
chr2 (1-102)||(6463355-6463456)
chr2 (1-230)||(8055531-8055762)
chr2 (1-102)||(8050978-8051079)
chr2 (126-230)||(6463228-6463332)
chr2 (1-57)||(12999426-12999482)
chr2 (126-199)||(8051103-8051178)
chr2 (126-193)||(12999297-12999366)
chr2 (151-230)||(8051164-8051247)
chr2 (162-213)||(12999289-12999341)
[»] chr6 (17 HSPs)
chr6 (1-102)||(17780054-17780155)
chr6 (1-102)||(27552026-27552128)
chr6 (1-102)||(8315421-8315521)
chr6 (1-102)||(8319960-8320060)
chr6 (1-99)||(27574657-27574756)
chr6 (1-57)||(17096236-17096292)
chr6 (126-197)||(8319862-8319935)
chr6 (1-51)||(17886816-17886866)
chr6 (1-51)||(17895691-17895741)
chr6 (126-197)||(8315323-8315396)
chr6 (137-230)||(27535334-27535429)
chr6 (176-230)||(8315267-8315319)
chr6 (176-230)||(8319806-8319858)
chr6 (126-213)||(27574541-27574630)
chr6 (1-57)||(14531749-14531805)
chr6 (189-230)||(27574507-27574547)
chr6 (126-174)||(17096120-17096167)
[»] chr1 (12 HSPs)
chr1 (1-102)||(39793970-39794070)
chr1 (1-102)||(26311649-26311749)
chr1 (1-102)||(26316140-26316240)
chr1 (9-102)||(16588395-16588488)
chr1 (1-57)||(43591783-43591839)
chr1 (164-230)||(26311800-26311868)
chr1 (126-197)||(39794097-39794169)
chr1 (162-230)||(26316278-26316348)
chr1 (176-230)||(39794198-39794250)
chr1 (176-230)||(39796802-39796854)
chr1 (177-218)||(16588288-16588329)
chr1 (156-197)||(39794151-39794194)
[»] chr4 (14 HSPs)
chr4 (3-102)||(31670232-31670330)
chr4 (135-230)||(44151829-44151925)
chr4 (156-230)||(44147339-44147414)
chr4 (1-57)||(53722146-53722202)
chr4 (1-57)||(8892582-8892638)
chr4 (1-57)||(10317025-10317081)
chr4 (1-57)||(43683636-43683692)
chr4 (1-57)||(27186285-27186341)
chr4 (1-57)||(35842886-35842942)
chr4 (5-57)||(50627904-50627956)
chr4 (135-199)||(3771116-3771181)
chr4 (135-199)||(44147294-44147359)
chr4 (173-231)||(31670379-31670435)
chr4 (166-230)||(53722313-53722378)
[»] scaffold0440 (3 HSPs)
scaffold0440 (135-186)||(7782-7833)
scaffold0440 (151-230)||(7820-7902)
scaffold0440 (162-199)||(7798-7834)
[»] scaffold0044 (2 HSPs)
scaffold0044 (135-199)||(44683-44748)
scaffold0044 (135-199)||(49263-49328)


Alignment Details
Target: chr3 (Bit Score: 106; Significance: 5e-53; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 21847250 - 21847483
Alignment:
Q  1 tgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgtatgtagaattaataaaggtcaattacaatttcatcataac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||| ||||||||||||||||||    
T  21847250 tgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgtatatagaatcaataaagatcatttacaatttcatcataac 21847349  T
Q  101 ttnnnnnnnnnnnnnnnnnnnnnnnaattcaca-caaaccttaggatcagaaactacttctgaactgcttctgaac--tgcttctgaac-tagcttctga 196  Q
    ||                       ||||||||  ||||||||| |||||||||| ||||||||||||||||||||  |||||||||||  |||||||||    
T  21847350 tttcttctctctcaattctctctctaattcacataaaaccttagaatcagaaactgcttctgaactgcttctgaacagtgcttctgaacagagcttctga 21847449  T
Q  197 acaagcttccgcttctggtttttctgcgctatca 230  Q
    ||||||||||||||||||||||||||||||||||    
T  21847450 acaagcttccgcttctggtttttctgcgctatca 21847483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 21850340 - 21850573
Alignment:
Q  1 tgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgtatgtagaattaataaaggtcaattacaatttcatcataac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||| ||||||||||||||||||    
T  21850340 tgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgtatatagaatcaataaagatcatttacaatttcatcataac 21850439  T
Q  101 ttnnnnnnnnnnnnnnnnnnnnnnnaattcaca-caaaccttaggatcagaaactacttctgaactgcttctgaac--tgcttctgaac-tagcttctga 196  Q
    ||                       ||||||||  ||||||||| |||||||||| ||||||||||||||||||||  |||||||||||  |||||||||    
T  21850440 tttcttctctctcaattctctctctaattcacataaaaccttagaatcagaaactgcttctgaactgcttctgaacagtgcttctgaacagagcttctga 21850539  T
Q  197 acaagcttccgcttctggtttttctgcgctatca 230  Q
    ||||||||||||||||||||||||||||||||||    
T  21850540 acaagcttccgcttctggtttttctgcgctatca 21850573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 11004421 - 11004365
Alignment:
Q  1 tgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 57  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||    
T  11004421 tgtgcttcaagcaacctagctagacattgtatataagctacctcctttgtatatttt 11004365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 9697727 - 9697783
Alignment:
Q  1 tgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 57  Q
    ||||||||||| |||||||||||| |||||||||||||| ||||||||||| |||||    
T  9697727 tgtgcttcaagaaacttagctagacattgtatataagctgcctcctttgtatatttt 9697783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 43547864 - 43547920
Alignment:
Q  1 tgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 57  Q
    |||||||||||||||||||| ||| ||||||||||||||| |||||||||| |||||    
T  43547864 tgtgcttcaagcaacttagcaagacattgtatataagctatctcctttgtatatttt 43547920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 9105414 - 9105470
Alignment:
Q  1 tgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 57  Q
    ||||||||||||||| || ||||| ||||||||| |||||||||||||||| |||||    
T  9105414 tgtgcttcaagcaacctaactagacattgtatatgagctacctcctttgtatatttt 9105470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 138 - 199
Target Start/End: Complemental strand, 54167223 - 54167161
Alignment:
Q  138 ccttaggatcagaaactacttctgaactgcttctgaac--tgcttctgaactagcttctgaaca 199  Q
    |||||| |||||||||| ||||||||||||||||||||  |||||||||||| |||||||||||    
T  54167223 ccttagaatcagaaactgcttctgaactgcttctgaacagtgcttctgaact-gcttctgaaca 54167161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 138 - 199
Target Start/End: Complemental strand, 54171803 - 54171741
Alignment:
Q  138 ccttaggatcagaaactacttctgaactgcttctgaac--tgcttctgaactagcttctgaaca 199  Q
    |||||| |||||||||| ||||||||||||||||||||  |||||||||||| |||||||||||    
T  54171803 ccttagaatcagaaactgcttctgaactgcttctgaacagtgcttctgaact-gcttctgaaca 54171741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 58
Target Start/End: Original strand, 43554713 - 43554765
Alignment:
Q  6 ttcaagcaacttagctagatattgtatataagctacctcctttgtacattttt 58  Q
    ||||||||||||||  ||| ||||||||| ||||||||| |||||| ||||||    
T  43554713 ttcaagcaacttagtaagacattgtatatgagctacctcttttgtatattttt 43554765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 4e-44; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 5 - 199
Target Start/End: Complemental strand, 30410343 - 30410148
Alignment:
Q  5 cttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgtatgtagaattaataaaggtcaattacaatttcatcataacttnn 104  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||      
T  30410343 cttcaagcaacctagctagatattgtatataagctacctcctttgtacatttttatatgtagaatcaataaagatcaattacaatttcatcataactttc 30410244  T
Q  105 nnnnnnnnnnnnnnnnnnnnnaattcacacaaaccttaggatcagaaactacttctgaact-gcttctgaactgcttctgaactagcttctgaaca 199  Q
                         |||||||| ||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  30410243 ttctctctcaattctctctctaattcacataaaccttagaatcagaaactgcttctgaactagcttctgaactgcttctgaactagcttctgaaca 30410148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 5 - 205
Target Start/End: Complemental strand, 30405834 - 30405634
Alignment:
Q  5 cttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgtatgtagaattaataaaggtcaattacaatttcatcataacttnn 104  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||      
T  30405834 cttcaagcaacctagctagatattgtatataagctacctcctttgtacatttttatatgtagaatcaataaagatcaattacaatttcatcataactttc 30405735  T
Q  105 nnnnnnnnnnnnnnnnnnnnnaattcacacaaaccttaggatcagaaactacttctgaactgcttctgaact-gcttctgaactagcttctgaacaagct 203  Q
                         |||||||| ||||||||| |||||||||| ||||||||||||||||||||| ||||||||||| |||||||||| ||||    
T  30405734 ttctctctcaattctctctctaattcacataaaccttagaatcagaaactgcttctgaactgcttctgaactagcttctgaact-gcttctgaactagct 30405636  T
Q  204 tc 205  Q
    ||    
T  30405635 tc 30405634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 231 - 311
Target Start/End: Original strand, 41780404 - 41780484
Alignment:
Q  231 cttttgacagtaagagccattctgcaagttggaggattttcttatgccatgttacatctccacctcttctaaatctgattc 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41780404 cttttgacagtaagagccattctgcaagttggaggattttcttatgccatgttacatctccacctcttctaaatctgattc 41780484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 28644701 - 28644799
Alignment:
Q  1 tgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgtatgtagaattaataaaggtcaattacaatttcatcataa 99  Q
    |||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||| ||||||||| |||||   |||||||||||||||||||||    
T  28644701 tgtgcttcaagcaacttagctagacagtgtatataagctacctcctttgtatatttttgcatgtagaatcaataagaatcaattacaatttcatcataa 28644799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 33072057 - 33072113
Alignment:
Q  1 tgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 57  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  33072057 tgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 33072113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 167 - 235
Target Start/End: Original strand, 38757331 - 38757400
Alignment:
Q  167 cttctgaactgcttctgaacta-gcttctgaacaagcttccgcttctggtttttctgcgctatcactttt 235  Q
    |||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||| ||||    
T  38757331 cttctgaactgcttctgaagagtgcttctgaacaagcttccgcttctggtttttctgcgctatcaatttt 38757400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 38757130 - 38757186
Alignment:
Q  1 tgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 57  Q
    |||| |||||||||| |||| |||||||||||||||||||||||||||||| |||||    
T  38757130 tgtgattcaagcaacctagccagatattgtatataagctacctcctttgtatatttt 38757186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 42234712 - 42234656
Alignment:
Q  1 tgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 57  Q
    |||||||||||||||||||||||| ||||||||||| |||||| ||||||| |||||    
T  42234712 tgtgcttcaagcaacttagctagacattgtatataaactaccttctttgtatatttt 42234656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 199
Target Start/End: Complemental strand, 30405677 - 30405628
Alignment:
Q  151 aactacttctgaact-gcttctgaactgcttctgaactagcttctgaaca 199  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  30405677 aactgcttctgaactagcttctgaactgcttctgaactagcttctgaaca 30405628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 28644850 - 28644890
Alignment:
Q  173 aactgcttctgaactagcttctgaacaagcttccgcttctg 213  Q
    ||||||||||||||| |||||||||| ||||||||||||||    
T  28644850 aactgcttctgaactcgcttctgaactagcttccgcttctg 28644890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 174
Target Start/End: Original strand, 38757253 - 38757301
Alignment:
Q  126 aattcacacaaaccttaggatcagaaactacttctgaactgcttctgaa 174  Q
    |||||||| ||||||||| || ||||||| |||||||||||||||||||    
T  38757253 aattcacataaaccttagaataagaaactgcttctgaactgcttctgaa 38757301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 30695432 - 30695530
Alignment:
Q  1 tgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgtatgtagaattaataaaggtcaattacaatttcatcataa 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||    
T  30695432 tgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattttcgtatgtagaatcaataaagatcaattacaatttcatcataa 30695530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 40367630 - 40367531
Alignment:
Q  1 tgtgcttcaagcaa-cttagctagatattgtatataagctacctcctttgtacatttttgtatgtagaattaataaaggtcaattacaatttcatcataa 99  Q
    |||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||  |||||||||| |||||   |||||||||||||||||||||    
T  40367630 tgtgcttcaagcaaacttggttagatattgtatataagctacctcctttgtacattttcatatgtagaatcaataagaatcaattacaatttcatcataa 40367531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 173 - 230
Target Start/End: Original strand, 30695594 - 30695651
Alignment:
Q  173 aactgcttctgaactagcttctgaacaagcttccgcttctggtttttctgcgctatca 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30695594 aactgcttctgaactagcttctgaacaagcttccgcttctggtttttctgcgctatca 30695651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 99
Target Start/End: Complemental strand, 40371747 - 40371669
Alignment:
Q  21 tagatattgtatataagctacctcctttgtacatttttgtatgtagaattaataaaggtcaattacaatttcatcataa 99  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||| |||||   |||| ||||||||||||||||    
T  40371747 tagatattgtatataagctacctcctttgtacattttcatatgtagaatcaataagaatcaactacaatttcatcataa 40371669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 36632441 - 36632497
Alignment:
Q  1 tgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 57  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  36632441 tgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 36632497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 26336823 - 26336767
Alignment:
Q  1 tgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 57  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||    
T  26336823 tgtgcttcaagcaacttaactagacattgtatataagctacctcctttgtatatttt 26336767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 135 - 201
Target Start/End: Original strand, 12019007 - 12019074
Alignment:
Q  135 aaaccttaggatcagaaactacttctgaactgcttctgaac--tgcttctgaactagcttctgaacaag 201  Q
    ||||||||| |||||||||| ||||||||||||||||||||  |||||||||||| |||||||||||||    
T  12019007 aaaccttagaatcagaaactgcttctgaactgcttctgaacagtgcttctgaact-gcttctgaacaag 12019074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 19502448 - 19502504
Alignment:
Q  1 tgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 57  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||| || |||||    
T  19502448 tgtgcttcaagcaacttagctaaacattgtatataagctacctcctttatatatttt 19502504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 199
Target Start/End: Complemental strand, 7099257 - 7099192
Alignment:
Q  135 aaaccttaggatcagaaactacttctgaactgcttctgaac--tgcttctgaactagcttctgaaca 199  Q
    ||||||||| |||||||||| ||||||||||||||||||||  |||||||||||| |||||||||||    
T  7099257 aaaccttagaatcagaaactgcttctgaactgcttctgaacagtgcttctgaact-gcttctgaaca 7099192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 199
Target Start/End: Complemental strand, 7103826 - 7103761
Alignment:
Q  135 aaaccttaggatcagaaactacttctgaactgcttctgaac--tgcttctgaactagcttctgaaca 199  Q
    ||||||||| |||||||||| ||||||||||||||||||||  |||||||||||| |||||||||||    
T  7103826 aaaccttagaatcagaaactgcttctgaactgcttctgaacagtgcttctgaact-gcttctgaaca 7103761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 199
Target Start/End: Original strand, 16798944 - 16799009
Alignment:
Q  135 aaaccttaggatcagaaactacttctgaactgcttctgaac--tgcttctgaactagcttctgaaca 199  Q
    ||||||||| |||||||||| ||||||||||||||||||||  |||||||||||| |||||||||||    
T  16798944 aaaccttagaatcagaaactgcttctgaactgcttctgaacagtgcttctgaact-gcttctgaaca 16799009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 201
Target Start/End: Original strand, 12023576 - 12023643
Alignment:
Q  135 aaaccttaggatcagaaactacttctgaactgcttctgaac--tgcttctgaactagcttctgaacaag 201  Q
    ||||||||| |||||||||| |||||||||||||| |||||  |||||||||||| |||||||||||||    
T  12023576 aaaccttagaatcagaaactgcttctgaactgcttttgaacagtgcttctgaact-gcttctgaacaag 12023643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 233
Target Start/End: Complemental strand, 40367427 - 40367383
Alignment:
Q  188 agcttctgaacaagcttccgcttctggtttttctgcgctatcactt 233  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  40367427 agcttctgaacaagcttccgcttctgg-ttttctgcgctatcactt 40367383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 135 - 230
Target Start/End: Original strand, 37682298 - 37682400
Alignment:
Q  135 aaaccttaggatcagaaactacttctgaac--tgcttctgaac---tgcttctgaacta--gcttctgaacaa-gcttccgcttctggtttttctgcgct 226  Q
    ||||||||| |||||||||| |||||||||  |||||||||||   ||||||||||| |  |||||||||||| |||||||||||| | |||||||||||    
T  37682298 aaaccttagaatcagaaactgcttctgaacagtgcttctgaacaagtgcttctgaacaactgcttctgaacaaagcttccgcttct-gattttctgcgct 37682396  T
Q  227 atca 230  Q
    ||||    
T  37682397 atca 37682400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 43385091 - 43385138
Alignment:
Q  1 tgtgcttcaagcaacttagctagatattgtatat-aagctacctcctt 47  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||    
T  43385091 tgtgcttcaagcaacttagctagacattgtatataaagctacctcctt 43385138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 20830346 - 20830304
Alignment:
Q  1 tgtgcttcaagcaacttagctagatattgtatataagctacct 43  Q
    |||||||||||||||||| ||||| ||||||||||||||||||    
T  20830346 tgtgcttcaagcaacttaactagacattgtatataagctacct 20830304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 230
Target Start/End: Complemental strand, 40371590 - 40371549
Alignment:
Q  188 agcttctgaacaagcttccgcttctggtttttctgcgctatca 230  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  40371590 agcttctgaacaagcttccgcttctgg-ttttctgcgctatca 40371549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 230
Target Start/End: Original strand, 16798989 - 16799067
Alignment:
Q  156 cttctgaactgcttctgaac--tgcttctgaacta--gcttctgaacaa-gcttccgcttctggtttttctgcgctatca 230  Q
    ||||||||||||||||||||  ||||||||||| |  |||||||||||| |||||||||||| | |||||||||||||||    
T  16798989 cttctgaactgcttctgaacagtgcttctgaacaactgcttctgaacaaagcttccgcttct-gattttctgcgctatca 16799067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 32486003 - 32485947
Alignment:
Q  1 tgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 57  Q
    |||||||||| |  |||||||||| ||||||||||||||||||||||| || |||||    
T  32486003 tgtgcttcaacctccttagctagacattgtatataagctacctcctttatatatttt 32485947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 16794383 - 16794421
Alignment:
Q  135 aaaccttaggatcagaaactacttctgaactgcttctga 173  Q
    ||||||||| |||||||||| ||||||||||||||||||    
T  16794383 aaaccttagaatcagaaactgcttctgaactgcttctga 16794421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 232
Target Start/End: Complemental strand, 7099179 - 7099105
Alignment:
Q  162 aactgcttctgaac--tgcttctgaacta--gcttctgaacaa-gcttccgcttctggtttttctgcgctatcact 232  Q
    ||||||||||||||  ||||||||||| |  |||||||||||| ||||||||||||| |||| |||||||||||||    
T  7099179 aactgcttctgaacagtgcttctgaacaactgcttctgaacaaagcttccgcttctgatttt-ctgcgctatcact 7099105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 199
Target Start/End: Complemental strand, 40367504 - 40367429
Alignment:
Q  126 aattcacacaaaccttaggatcagaaactacttct-gaactgcttctgaac--tgcttctgaactagcttctgaaca 199  Q
    |||||||| ||||||||| ||||||||||||||||  ||||| ||||||||   |||||||||| ||||||||||||    
T  40367504 aattcaca-aaaccttagaatcagaaactacttctaaaactgattctgaacagagcttctgaacaagcttctgaaca 40367429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 4e-41; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 27761536 - 27761767
Alignment:
Q  1 tgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgtatgtagaattaataaaggtcaattacaa-tttcatcataa 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||| |||||| |||||||||||    
T  27761536 tgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttatatgtagaatcaataaagatcatttacaattttcatcataa 27761635  T
Q  100 cttnnnnnnnnnnnnnnnnnnnnnnnaattcaca-caaaccttaggatcagaaactacttctgaactgcttctgaac--tgcttctgaactagcttctga 196  Q
    |||                       ||||||||  ||||||||| || ||||||| ||||||||||||||||||||  |||||||||||| ||||||||    
T  27761636 ctttcttctctctcaattctctctctaattcacataaaaccttagaattagaaactgcttctgaactgcttctgaacagtgcttctgaact-gcttctga 27761734  T
Q  197 acaagcttccgcttctggtttttctgcgctatca 230  Q
    |||||||||||||||| | |||||||||||||||    
T  27761735 acaagcttccgcttct-gattttctgcgctatca 27761767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 27756985 - 27757087
Alignment:
Q  1 tgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgtatgtagaattaataaaggtcaattacaa-tttcatcataa 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||| |||||| |||||||||||    
T  27756985 tgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttatatgtagaatcaataaagatcatttacaattttcatcataa 27757084  T
Q  100 ctt 102  Q
    |||    
T  27757085 ctt 27757087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 47419596 - 47419498
Alignment:
Q  1 tgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgtatgtagaattaataaaggtcaattacaatttcatcataa 99  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| ||||||  |||||||||||||||||||||    
T  47419596 tgtgtttcaagcaacttagctagacattgtatataagctacctcctttgtatattttcgtatgtagaatcaataaaaatcaattacaatttcatcataa 47419498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 22901295 - 22901396
Alignment:
Q  1 tgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgtatgtagaattaataaaggtca-attacaatttcatcataa 99  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||| ||||||| |||  |||||| ||||||||||    
T  22901295 tgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtata-ttttgtatgtagaatcaataaagatcattttacaaattcatcataa 22901393  T
Q  100 ctt 102  Q
    |||    
T  22901394 ctt 22901396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 151 - 230
Target Start/End: Original strand, 27757172 - 27757252
Alignment:
Q  151 aactacttctgaac--tgcttctgaactgcttctgaactagcttctgaacaagcttccgcttctggtttttctgcgctatca 230  Q
    |||| |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  27757172 aactgcttctgaacggtgcttctgaactgcttctgaactagcttctgaacaagcttccgcttct-gattttctgcgctatca 27757252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 156 - 235
Target Start/End: Original strand, 22901499 - 22901578
Alignment:
Q  156 cttctgaactgcttctgaact-gcttctgaactagcttctgaacaagcttccgcttctggtttttctgcgctatcactttt 235  Q
    |||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  22901499 cttctgaactgcttcttaactagcttctaaactagcttctgaacaagcttccgcttct-gattttctgcgctatcactttt 22901578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 7466541 - 7466485
Alignment:
Q  1 tgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 57  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  7466541 tgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 7466485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 733684 - 733634
Alignment:
Q  1 tgtgcttcaagcaacttagctagatattgtatataagctacctcctttgta 51  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  733684 tgtgcttcgagcaacttagctagacattgtatataagctacctcctttgta 733634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 199
Target Start/End: Complemental strand, 7939966 - 7939901
Alignment:
Q  135 aaaccttaggatcagaaactacttctgaactgcttctgaac--tgcttctgaactagcttctgaaca 199  Q
    ||||||||| |||||||||| ||||||||||||||||||||  |||||||||||| |||||||||||    
T  7939966 aaaccttagaatcagaaactgcttctgaactgcttctgaacagtgcttctgaact-gcttctgaaca 7939901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 199
Target Start/End: Complemental strand, 7944519 - 7944454
Alignment:
Q  135 aaaccttaggatcagaaactacttctgaactgcttctgaac--tgcttctgaactagcttctgaaca 199  Q
    ||||||||| |||||||||| ||||||||||||||||||||  |||||||||||| |||||||||||    
T  7944519 aaaccttagaatcagaaactgcttctgaactgcttctgaacagtgcttctgaact-gcttctgaaca 7944454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 126 - 198
Target Start/End: Original strand, 27757111 - 27757185
Alignment:
Q  126 aattcacacaaa-ccttaggatcagaaactacttctgaactgcttctgaac--tgcttctgaactagcttctgaac 198  Q
    |||||||| ||| |||||| |||||||||| ||||||||||||||||||||  |||||||||||| ||||||||||    
T  27757111 aattcacataaaaccttagaatcagaaactgcttctgaactgcttctgaacagtgcttctgaact-gcttctgaac 27757185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 230
Target Start/End: Complemental strand, 7939891 - 7939808
Alignment:
Q  151 aactacttctgaac--tgcttctgaactgcttctgaacta--gcttctgaac-aagcttccgcttctggtttttctgcgctatca 230  Q
    |||| |||||||||  |||||||||||||||||||||| |  |||||||||| |||||||||||||| | |||||||||||||||    
T  7939891 aactgcttctgaacagtgcttctgaactgcttctgaacaactgcttctgaacaaagcttccgcttct-gattttctgcgctatca 7939808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 230
Target Start/End: Complemental strand, 7944468 - 7944385
Alignment:
Q  151 aactacttctgaac--tgcttctgaactgcttctgaacta--gcttctgaac-aagcttccgcttctggtttttctgcgctatca 230  Q
    |||| |||||||||  |||||||||||||||||||||| |  |||||||||| |||||||||||||| | |||||||||||||||    
T  7944468 aactgcttctgaacagtgcttctgaactgcttctgaacaactgcttctgaacaaagcttccgcttct-gattttctgcgctatca 7944385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 126 - 199
Target Start/End: Original strand, 22901420 - 22901495
Alignment:
Q  126 aattcacacaaa-ccttaggatcagaaactacttctgaactgcttctgaac--tgcttctgaactagcttctgaaca 199  Q
    |||||||| ||| |||||| |||||||||| ||||||||||||||||||||  |||||||||| | |||||||||||    
T  22901420 aattcacataaaaccttagaatcagaaactgcttctgaactgcttctgaacagtgcttctgaa-ttgcttctgaaca 22901495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 230
Target Start/End: Complemental strand, 47419417 - 47419376
Alignment:
Q  188 agcttctgaacaagcttccgcttctggtttttctgcgctatca 230  Q
    ||||||||||||||||||||||||| | |||||||||||||||    
T  47419417 agcttctgaacaagcttccgcttct-gattttctgcgctatca 47419376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 205
Target Start/End: Original strand, 22901497 - 22901537
Alignment:
Q  165 tgcttctgaactgcttctgaactagcttctgaacaagcttc 205  Q
    |||||||||||||||||| ||||||||||| ||| ||||||    
T  22901497 tgcttctgaactgcttcttaactagcttctaaactagcttc 22901537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 4e-41; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 6463456 - 6463355
Alignment:
Q  1 tgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgtatgtagaattaataaaggtcaattacaatttcatcataac 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||    
T  6463456 tgtgcttcaagcaacctagctagatattgtatataagctacctcctttgtacattttagtatgtagaatcaataaagatcaattacaatttcatcataac 6463357  T
Q  101 tt 102  Q
    ||    
T  6463356 tt 6463355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 8055531 - 8055762
Alignment:
Q  1 tgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgtatgtagaattaataaaggtcaattacaattt-catcataa 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||| ||||||| ||  ||||||||| ||||||||    
T  8055531 tgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttca-tatgtagaatcaataaagatcttttacaattttcatcataa 8055629  T
Q  100 cttnnnnnnnnnnnnnnnnnnnnnnnaattcacacaaa-ccttaggatcagaaactacttctgaac--tgcttctgaactgcttctgaactagcttctga 196  Q
    |||                       |||||||| ||| |||||| |||||||||| |||||||||  ||||||||||||||||||||||||||||||||    
T  8055630 ctttcttctctctcaattctctctctaattcacataaaaccttagaatcagaaactgcttctgaacagtgcttctgaactgcttctgaactagcttctga 8055729  T
Q  197 acaagcttccgcttctggtttttctgcgctatca 230  Q
    |||||||||||||||| | |||||||||||||||    
T  8055730 acaagcttccgcttct-gattttctgcgctatca 8055762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 8050978 - 8051079
Alignment:
Q  1 tgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgtatgtagaattaataaaggtcaattacaa-tttcatcataa 99  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||  |||||||||| ||||||| ||  |||||| |||||||||||    
T  8050978 tgtgcttcaagcaacctagctagatattgtatataagctgcctcctttgtaca-tttcatatgtagaatcaataaagatcttttacaattttcatcataa 8051076  T
Q  100 ctt 102  Q
    |||    
T  8051077 ctt 8051079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 126 - 230
Target Start/End: Complemental strand, 6463332 - 6463228
Alignment:
Q  126 aattcacacaaaccttaggatcagaaactacttctgaactgcttctgaactgctt-ctgaactag--cttctgaacaagcttccgcttctggtttttctg 222  Q
    |||||||| ||||||||| || ||||||| |||||||||||||||||||||  || |||||| ||  ||||||||||||||||||||||||| |||||||    
T  6463332 aattcaca-aaaccttagaataagaaactgcttctgaactgcttctgaactaatttctgaac-agtacttctgaacaagcttccgcttctgg-ttttctg 6463236  T
Q  223 cgctatca 230  Q
    ||||||||    
T  6463235 cgctatca 6463228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 12999482 - 12999426
Alignment:
Q  1 tgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 57  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||    
T  12999482 tgtgcttcaagcaacttagctagacattgtatataagctatctcctttgtatatttt 12999426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 199
Target Start/End: Original strand, 8051103 - 8051178
Alignment:
Q  126 aattcacacaaa-ccttaggatcagaaactacttctgaactgcttctgaac--tgcttctgaactagcttctgaaca 199  Q
    |||||||| ||| |||||| |||||||||| ||||||||||||||||||||  |||||||||||| |||||||||||    
T  8051103 aattcacataaaaccttagaatcagaaactgcttctgaactgcttctgaacagtgcttctgaact-gcttctgaaca 8051178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 193
Target Start/End: Complemental strand, 12999366 - 12999297
Alignment:
Q  126 aattcacacaaaccttaggatcagaaactacttctgaact-gcttctgaact-gcttctgaactagcttc 193  Q
    |||||||| |||||||||||||||||||| |||||||||| ||||||||| | ||||||| |||||||||    
T  12999366 aattcacataaaccttaggatcagaaactgcttctgaactagcttctgaattagcttctggactagcttc 12999297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 230
Target Start/End: Original strand, 8051164 - 8051247
Alignment:
Q  151 aactacttctgaac--tgcttctgaactgcttctgaacta--gcttctgaac-aagcttccgcttctggtttttctgcgctatca 230  Q
    |||| |||||||||  |||||||||||||||||||||| |  |||||||||| |||||||||||||| | |||||||||||||||    
T  8051164 aactgcttctgaacagtgcttctgaactgcttctgaacaactgcttctgaacaaagcttccgcttct-gattttctgcgctatca 8051247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 213
Target Start/End: Complemental strand, 12999341 - 12999289
Alignment:
Q  162 aactgcttctgaact-gcttctgaactagcttctgaacaagcttccgcttctg 213  Q
    ||||||||||||||| ||||||||| ||||||||| || ||||||||||||||    
T  12999341 aactgcttctgaactagcttctgaattagcttctggactagcttccgcttctg 12999289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 17780054 - 17780155
Alignment:
Q  1 tgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgtatgtagaattaataaaggtcaattacaatttcatcataac 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||   ||||||||||||||||||||||    
T  17780054 tgtgcttcaagcaacttagctagatattgtatataagctatctcctttgtacattttcgtatgtagaatcaataagaatcaattacaatttcatcataac 17780153  T
Q  101 tt 102  Q
    ||    
T  17780154 tt 17780155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 27552128 - 27552026
Alignment:
Q  1 tgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattttt-gtatgtagaattaataaaggtcaattacaatttcatcataa 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||   |||||||||||||||||||||    
T  27552128 tgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttcgtatggagaatcaataagaatcaattacaatttcatcataa 27552029  T
Q  100 ctt 102  Q
    |||    
T  27552028 ctt 27552026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 8315521 - 8315421
Alignment:
Q  1 tgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgtatgtagaattaataaaggtcaattacaatttcatcataac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||||| ||||||| |||||| || ||||||||||||    
T  8315521 tgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtaca-tttcatatgtagaatcaataaagatcaatttcattttcatcataac 8315423  T
Q  101 tt 102  Q
    ||    
T  8315422 tt 8315421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 8320060 - 8319960
Alignment:
Q  1 tgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgtatgtagaattaataaaggtcaattacaatttcatcataac 100  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||| |||||| || ||||||||||||    
T  8320060 tgtgcttcaagaaacttagctagatattgtatataagctacctcctttgtacatttct-tatgtagaatcaataaagatcaatttcattttcatcataac 8319962  T
Q  101 tt 102  Q
    ||    
T  8319961 tt 8319960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 27574756 - 27574657
Alignment:
Q  1 tgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattttt-gtatgtagaattaataaaggtcaattacaatttcatcataa 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| | ||| |||||   ||||||||||||||| |||||    
T  27574756 tgtgcttcaagcaacttagctagatattgtatataagctacctcctttgaacatttttcgtatggaaaatcaataagaatcaattacaatttcaccataa 27574657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 17096292 - 17096236
Alignment:
Q  1 tgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 57  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  17096292 tgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtacatttt 17096236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 126 - 197
Target Start/End: Complemental strand, 8319935 - 8319862
Alignment:
Q  126 aattcacacaaaccttaggatcagaaactacttctgaactgcttctga--actgcttctgaactagcttctgaa 197  Q
    |||||||| ||||||||| || ||||||| ||||||||||||||||||  | ||||||||||||||||||||||    
T  8319935 aattcacataaaccttagaataagaaactgcttctgaactgcttctgaagagtgcttctgaactagcttctgaa 8319862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 17886866 - 17886816
Alignment:
Q  1 tgtgcttcaagcaacttagctagatattgtatataagctacctcctttgta 51  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  17886866 tgtgcttcaagcagcttagctagacattgtatataagctacctcctttgta 17886816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 17895741 - 17895691
Alignment:
Q  1 tgtgcttcaagcaacttagctagatattgtatataagctacctcctttgta 51  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  17895741 tgtgcttcaagcaacttagctaggcattgtatataagctacctcctttgta 17895691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 126 - 197
Target Start/End: Complemental strand, 8315396 - 8315323
Alignment:
Q  126 aattcacacaaaccttaggatcagaaactacttctgaactgcttctga--actgcttctgaactagcttctgaa 197  Q
    |||||||| ||||||||| || ||||||| ||||||||||||||||||  | ||||| ||||||||||||||||    
T  8315396 aattcacataaaccttagaataagaaactgcttctgaactgcttctgaagagtgcttatgaactagcttctgaa 8315323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 137 - 230
Target Start/End: Complemental strand, 27535429 - 27535334
Alignment:
Q  137 accttaggatcagaaactacttctgaa-ctgcttctgaact-gcttctgaact-agcttctgaacaagcttccgcttctggtttttctgcgctatca 230  Q
    ||||||| || ||||||| ||||| || || ||| |||||| ||||||||||  ||||||||||||||||||||||||||| |||||||||||||||    
T  27535429 accttagaattagaaactgcttctaaaactacttatgaactagcttctgaacagagcttctgaacaagcttccgcttctgg-ttttctgcgctatca 27535334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 230
Target Start/End: Complemental strand, 8315319 - 8315267
Alignment:
Q  176 tgcttctgaactagcttctgaacaagcttccgcttctggtttttctgcgctatca 230  Q
    |||||||||||| |||||||||||||||||||||||| | |||||||||||||||    
T  8315319 tgcttctgaact-gcttctgaacaagcttccgcttct-gattttctgcgctatca 8315267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 230
Target Start/End: Complemental strand, 8319858 - 8319806
Alignment:
Q  176 tgcttctgaactagcttctgaacaagcttccgcttctggtttttctgcgctatca 230  Q
    |||||||||||| |||||||||||||||||||||||| | |||||||||||||||    
T  8319858 tgcttctgaact-gcttctgaacaagcttccgcttct-gattttctgcgctatca 8319806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 213
Target Start/End: Complemental strand, 27574630 - 27574541
Alignment:
Q  126 aattcacacaaaccttaggatcagaaactacttctgaa-ctgcttctgaact-gcttctgaact-agcttctgaacaagcttccgcttctg 213  Q
    |||||||| ||||||||| |||||||||| ||||| || ||||||||||||| ||||||||||  |||||  |||||||||||||||||||    
T  27574630 aattcaca-aaaccttagaatcagaaactgcttctcaaactgcttctgaactagcttctgaacagagcttaggaacaagcttccgcttctg 27574541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 14531805 - 14531749
Alignment:
Q  1 tgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 57  Q
    ||||||| |||||||||||||||| ||||||||||  ||||| |||||||| |||||    
T  14531805 tgtgcttgaagcaacttagctagacattgtatatactctaccacctttgtatatttt 14531749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 230
Target Start/End: Complemental strand, 27574547 - 27574507
Alignment:
Q  189 gcttctgaacaagcttccgcttctggtttttctgcgctatca 230  Q
    |||||||||||||||||||||| ||| |||||||||||||||    
T  27574547 gcttctgaacaagcttccgcttttgg-ttttctgcgctatca 27574507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 174
Target Start/End: Complemental strand, 17096167 - 17096120
Alignment:
Q  126 aattcacacaaaccttaggatcagaaactacttctgaactgcttctgaa 174  Q
    |||||||| ||||||||| || ||||||| |||||||||||||||||||    
T  17096167 aattcaca-aaaccttagaataagaaactgcttctgaactgcttctgaa 17096120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 6e-34; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 39793970 - 39794070
Alignment:
Q  1 tgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgtatgtagaattaataaaggtcaattacaatttcatcataac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||||| ||||||| ||||||||| ||||||||||||    
T  39793970 tgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtaca-tttcatatgtagaatcaataaagatcaattacattttcatcataac 39794068  T
Q  101 tt 102  Q
    ||    
T  39794069 tt 39794070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 26311649 - 26311749
Alignment:
Q  1 tgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgtatgtagaattaataaaggtcaattacaatttcatcataac 100  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||||| | ||||||||| ||||| ||||||| ||||||||||||||||||||||    
T  26311649 tgtgcttcaagcaacctagctagatattgtatataagctacttcctttgtata-ttttgtatgcagaatcaataaagatcaattacaatttcatcataac 26311747  T
Q  101 tt 102  Q
    ||    
T  26311748 tt 26311749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 26316140 - 26316240
Alignment:
Q  1 tgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgtatgtagaattaataaaggtcaattacaatttcatcataac 100  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||||| | ||||||||| ||||| ||||||| ||||||||||||||||||||||    
T  26316140 tgtgcttcaagcaacctagctagatattgtatataagctacttcctttgtata-ttttgtatgcagaatcaataaagatcaattacaatttcatcataac 26316238  T
Q  101 tt 102  Q
    ||    
T  26316239 tt 26316240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 9 - 102
Target Start/End: Complemental strand, 16588488 - 16588395
Alignment:
Q  9 aagcaacttagctagatattgtatataagctacctcctttgtacatttttgtatgtagaattaataaaggtcaattacaatttcatcataactt 102  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||| |||||   ||||||||||||||||||||||||    
T  16588488 aagcaacttagctagacattgtatataagctacctcctttgtatatttttgtatggagaatcaataagaatcaattacaatttcatcataactt 16588395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 43591839 - 43591783
Alignment:
Q  1 tgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 57  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||    
T  43591839 tgtgcttcaagcaacttggctagacattgtatataagctacctcctttgtatatttt 43591783  T

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Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 164 - 230
Target Start/End: Original strand, 26311800 - 26311868
Alignment:
Q  164 ctgcttctgaact-gcttctgaacta-gcttctgaacaagcttccgcttctggtttttctgcgctatca 230  Q
    ||||||||||||| ||||||||||   ||||||||||||||||||||||||||||||||||||| ||||    
T  26311800 ctgcttctgaactagcttctgaacagtgcttctgaacaagcttccgcttctggtttttctgcgcaatca 26311868  T

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Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 126 - 197
Target Start/End: Original strand, 39794097 - 39794169
Alignment:
Q  126 aattcacacaaaccttaggatcagaaactacttctgaactgcttctga--actgcttctgaactagcttctgaa 197  Q
    |||||||| ||||||||| || ||||||||||||||||||||||||||  | |||||||||||| |||||||||    
T  39794097 aattcacataaaccttagaataagaaactacttctgaactgcttctgaagagtgcttctgaact-gcttctgaa 39794169  T

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Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 26316278 - 26316348
Alignment:
Q  162 aactgcttctgaactg-cttctgaacta-gcttctgaacaagcttccgcttctggtttttctgcgctatca 230  Q
    |||||||||||||||  |||||||||   |||||| |||||||||||| ||||||||||||||||||||||    
T  26316278 aactgcttctgaactaacttctgaacagtgcttctaaacaagcttccgtttctggtttttctgcgctatca 26316348  T

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Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 230
Target Start/End: Original strand, 39794198 - 39794250
Alignment:
Q  176 tgcttctgaactagcttctgaacaagcttccgcttctggtttttctgcgctatca 230  Q
    |||||||||||| |||||||||||||||||||||||| | |||||||||||||||    
T  39794198 tgcttctgaact-gcttctgaacaagcttccgcttct-gattttctgcgctatca 39794250  T

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Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 230
Target Start/End: Original strand, 39796802 - 39796854
Alignment:
Q  176 tgcttctgaactagcttctgaacaagcttccgcttctggtttttctgcgctatca 230  Q
    |||||||||||| |||||||||||||||||||||||| | |||||||||||||||    
T  39796802 tgcttctgaact-gcttctgaacaagcttccgcttct-gattttctgcgctatca 39796854  T

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Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 16588329 - 16588288
Alignment:
Q  177 gcttctgaactagcttctgaacaagcttccgcttctggtttt 218  Q
    |||||||||| ||||| |||||||||||||||||||||||||    
T  16588329 gcttctgaacaagcttatgaacaagcttccgcttctggtttt 16588288  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 197
Target Start/End: Original strand, 39794151 - 39794194
Alignment:
Q  156 cttctgaactgcttctgaac--tgcttctgaactagcttctgaa 197  Q
    |||||||||||||||||||   ||||||||||||||||||||||    
T  39794151 cttctgaactgcttctgaagagtgcttctgaactagcttctgaa 39794194  T

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Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 102
Target Start/End: Original strand, 31670232 - 31670330
Alignment:
Q  3 tgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgtatgtagaattaataaaggtcaattacaatttcatcataactt 102  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| | ||||| ||||||||| ||||||| ||| ||||||||||||||||||||    
T  31670232 tgcttcaagcaacttagctagacattgtatataagctacctcctttgtata-ttttgaatgtagaatcaataaagatcatttacaatttcatcataactt 31670330  T

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Target: chr4; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 135 - 230
Target Start/End: Original strand, 44151829 - 44151925
Alignment:
Q  135 aaaccttaggatcagaaactacttctgaactgcttctgaac--tgcttctgaactagcttctgaacaagcttccgcttctggtttttctgcgctatca 230  Q
    ||||||||| |||||||||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  44151829 aaaccttagaatcagaaactgcttctgaactgcttctgaacagtgcttctgaactagcttctgaacaagcttccgcttct-gattttctgcgctatca 44151925  T

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Target: chr4; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 156 - 230
Target Start/End: Original strand, 44147339 - 44147414
Alignment:
Q  156 cttctgaactgcttctgaac--tgcttctgaactagcttctgaacaagcttccgcttctggtttttctgcgctatca 230  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  44147339 cttctgaactgcttctgaacagtgcttctgaactagcttctgaacaagcttccgcttct-gattttctgcgctatca 44147414  T

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Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 53722146 - 53722202
Alignment:
Q  1 tgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 57  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  53722146 tgtgcttcaagcaacttagctatatattgtatataagctacctcctttgtacatttt 53722202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 8892638 - 8892582
Alignment:
Q  1 tgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 57  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||    
T  8892638 tgtgcttcaagcaacttaactagacattgtatataagctacctcctttgtatatttt 8892582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 10317081 - 10317025
Alignment:
Q  1 tgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 57  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||    
T  10317081 tgtgcttcaagcaacttaactagacattgtatataagctacctcctttgtatatttt 10317025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 43683692 - 43683636
Alignment:
Q  1 tgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 57  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||    
T  43683692 tgtgcttcaagcaacttagctagacattgtatataagctacatcctttgtatatttt 43683636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 27186285 - 27186341
Alignment:
Q  1 tgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 57  Q
    ||||||||||| |||||||||||| |||||||||||||| ||||||||||| |||||    
T  27186285 tgtgcttcaagaaacttagctagacattgtatataagctgcctcctttgtatatttt 27186341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 35842886 - 35842942
Alignment:
Q  1 tgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 57  Q
    ||||||||||||||||||| |||| ||||||||||| |||||||||||||| |||||    
T  35842886 tgtgcttcaagcaacttagttagacattgtatataaactacctcctttgtatatttt 35842942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 50627956 - 50627904
Alignment:
Q  5 cttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 57  Q
    |||||||||||||||||||| ||||||||||||||||||||||| || |||||    
T  50627956 cttcaagcaacttagctagacattgtatataagctacctcctttatatatttt 50627904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 199
Target Start/End: Original strand, 3771116 - 3771181
Alignment:
Q  135 aaaccttaggatcagaaactacttctgaactgcttctgaac--tgcttctgaactagcttctgaaca 199  Q
    ||||||||| |||||||||| ||||||||||||||||||||  |||||||||||| |||||||||||    
T  3771116 aaaccttagaatcagaaactgcttctgaactgcttctgaacagtgcttctgaact-gcttctgaaca 3771181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 199
Target Start/End: Original strand, 44147294 - 44147359
Alignment:
Q  135 aaaccttaggatcagaaactacttctgaactgcttctgaac--tgcttctgaactagcttctgaaca 199  Q
    ||||||||| |||||||||| ||||||||||||||||||||  |||||||||||| |||||||||||    
T  44147294 aaaccttagaatcagaaactgcttctgaactgcttctgaacagtgcttctgaact-gcttctgaaca 44147359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 231
Target Start/End: Original strand, 31670379 - 31670435
Alignment:
Q  173 aactgcttctgaactagcttctgaacaagcttccgcttctggtttttctgcgctatcac 231  Q
    |||||||||||||||| ||||||||| |||||||||||||| ||||  |||||||||||    
T  31670379 aactgcttctgaactaacttctgaactagcttccgcttctgatttt--tgcgctatcac 31670435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 230
Target Start/End: Original strand, 53722313 - 53722378
Alignment:
Q  166 gcttctgaac--tgcttctgaactagcttctgaacaagcttccgcttctggtttttctgcgctatca 230  Q
    ||||||||||  |||||| ||||  |||||||||||||||||||||||||| |||||||||||||||    
T  53722313 gcttctgaacagtgcttcagaacctgcttctgaacaagcttccgcttctgg-ttttctgcgctatca 53722378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 135 - 186
Target Start/End: Original strand, 7782 - 7833
Alignment:
Q  135 aaaccttaggatcagaaactacttctgaactgcttctgaactgcttctgaac 186  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  7782 aaaccttagaatcagaaactgcttctgaactgcttctgaactgcttctgaac 7833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 230
Target Start/End: Original strand, 7820 - 7902
Alignment:
Q  151 aactacttctgaac--tgcttctgaac--tgcttctgaactagcttctgaacaagcttccgcttctggtttttctgcgctatca 230  Q
    |||| |||||||||  |||||||||||  |||||||||||| ||||||||||||||||||||||||   |||||||||||||||    
T  7820 aactgcttctgaacagtgcttctgaacagtgcttctgaacttgcttctgaacaagcttccgcttct-aattttctgcgctatca 7902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 199
Target Start/End: Original strand, 7798 - 7834
Alignment:
Q  162 aactgcttctgaactgcttctgaactagcttctgaaca 199  Q
    |||||||||||||||||||||||||| |||||||||||    
T  7798 aactgcttctgaactgcttctgaact-gcttctgaaca 7834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 199
Target Start/End: Complemental strand, 44748 - 44683
Alignment:
Q  135 aaaccttaggatcagaaactacttctgaactgcttctgaac--tgcttctgaactagcttctgaaca 199  Q
    ||||||||| |||||||||| ||||||||||||||||||||  |||||||||||| |||||||||||    
T  44748 aaaccttagaatcagaaactgcttctgaactgcttctgaacagtgcttctgaact-gcttctgaaca 44683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 135 - 199
Target Start/End: Complemental strand, 49328 - 49263
Alignment:
Q  135 aaaccttaggatcagaaactacttctgaactgcttctgaac--tgcttctgaactagcttctgaaca 199  Q
    ||||||||| |||||||||| ||| ||||||||||||||||  |||||||||||| |||||||||||    
T  49328 aaaccttagaatcagaaactgcttatgaactgcttctgaacagtgcttctgaact-gcttctgaaca 49263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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