View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19495_low_31 (Length: 247)
Name: NF19495_low_31
Description: NF19495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19495_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 139; Significance: 8e-73; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 15 - 234
Target Start/End: Original strand, 29737595 - 29737808
Alignment:
| Q |
15 |
attttattcttataacatattagatttaagatacttttaatttggaaagtaactgctccaatggccaaagagttcagctacatgctaagttttggtttga |
114 |
Q |
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| T |
29737595 |
attttattcttataacatattagatctaagattcttttaatttggaaagtaactgctacaacggccaaaaagttcagctacatgctaagttctggtt-ga |
29737693 |
T |
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| Q |
115 |
tatgtattatggtattgtctttagtcttatattcaaattgagtgtgtgagtataatagtgaatgtttgttttttgctatacttttatgccattcttgaat |
214 |
Q |
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| T |
29737694 |
tatgtgt---ggtgttgtctttagtcttat--tcaaattgagtgtgtgagtataatagtggatgtttgttttttgctacactttgatgccattcttgaat |
29737788 |
T |
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| Q |
215 |
aataaatttgctcatgttga |
234 |
Q |
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| T |
29737789 |
agtaaatttgctcatgttga |
29737808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 29718486 - 29718418
Alignment:
| Q |
34 |
ttagatttaagatacttttaatttggaaagtaactgctccaatggccaaagagttcagctacatgctaa |
102 |
Q |
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| T |
29718486 |
ttagatttaagatccttttaatttggaaagtaactgctccaatggccaaagagttcagctacatgctaa |
29718418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 32
Target Start/End: Complemental strand, 29722601 - 29722573
Alignment:
| Q |
4 |
aaaaaatgtagattttattcttataacat |
32 |
Q |
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| T |
29722601 |
aaaaaatgtagattttattcttataacat |
29722573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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