View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19495_low_9 (Length: 506)
Name: NF19495_low_9
Description: NF19495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19495_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 419; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 1 - 496
Target Start/End: Original strand, 42393653 - 42394148
Alignment:
| Q |
1 |
cctggtttgttcatcatttctgccattgcaaactcaacggtattggaggatgtgtctgatccaccaagtaccatgtcctgttcatacaaactcaatggta |
100 |
Q |
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| T |
42393653 |
cctggtttgttcatcatttctgccattgcaaattcaacggtattggaggatgtgtctgatccaccaagtaccatgtcctgttcatacaaactcaatggta |
42393752 |
T |
|
| Q |
101 |
ttaagttcttcaacacgtgccttagggcacatgttagcattctcaaataaattttaatttgaatcagagttaaataaaccatatgccgcnnnnnnnngtg |
200 |
Q |
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|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||| |
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| T |
42393753 |
ttaagttcttcaacgcacgccttagggcacatgttagcattctcaaataaattttaatttgaatcagagttaaacaaaccatataccgcaaaaaaaagtg |
42393852 |
T |
|
| Q |
201 |
agaagacgctaaacataaatgtgtaacaaaggtagcataccaggagaagagccttcacgtgggtgcttgtgaatggtgtcttggaatcaccttcctcctt |
300 |
Q |
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| T |
42393853 |
agaagacgctaaacataaatgtgtaacaaaggtagcataccaggagaagagccttcacgtgggtgcttgtgaatggtgtcttggaatcaccttcctcctt |
42393952 |
T |
|
| Q |
301 |
caaattcaacaaaaactgcaaaaaatccttactttcactctcctttccttctacatccttcaccattcgttcaccaatcatcttttcaaatattccatca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42393953 |
caaattcaacaaaaactgcaaaaaatccttactttcactctcctttccttctacatccttcaccattcgttcaccaatcatcttttcaaatattccatca |
42394052 |
T |
|
| Q |
401 |
aaacgaggcaccaaaagattcatatctttcacaataccctgcaaatcaaaccgagccaacgcaggnnnnnnntccgacaagttcggcttccctatg |
496 |
Q |
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| T |
42394053 |
aaacgaggcaccaaaagattcatatctttcacaataccctgcaaatcaaaccgagccagcgcaggaaaaaaatctgacaagttcggcttccctatg |
42394148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 225 - 492
Target Start/End: Original strand, 42377959 - 42378229
Alignment:
| Q |
225 |
aacaaaggtagcataccaggagaagagccttcacgtgggtgcttgtgaatggtgtcttggaatcaccttcctccttcaaattcaacaaaaactgcaaaaa |
324 |
Q |
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|||||| ||||||||||| ||| |||||||| || || || |||| || |||||||| |||||||| |||||||||||||||||||||||||||| ||| |
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| T |
42377959 |
aacaaaagtagcataccatgagtagagccttaacatgagtatttgtaaacggtgtcttagaatcaccctcctccttcaaattcaacaaaaactgcagaaa |
42378058 |
T |
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| Q |
325 |
atccttactttcact---ctcctttccttctacatccttcaccattcgttcaccaatcatcttttcaaatattccatcaaaacgaggcaccaaaagattc |
421 |
Q |
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| T |
42378059 |
gtccctactcccattattctccttcccatcctcttccttcttcaatcgttcaccaatcatcttctcaaatatcccatcaaagcgaggcaccaaagcattc |
42378158 |
T |
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| Q |
422 |
atatctttcacaataccctgcaaatcaaaccgagccaacgcaggnnnnnnntccgacaagttcggcttccc |
492 |
Q |
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||||||||||||| |||||||||||||||||| |||||| |||| |||||||| ||||||||||| |
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| T |
42378159 |
atatctttcacaacaccctgcaaatcaaaccgggccaacccaggaaaaaaatccgacaaattcggcttccc |
42378229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 2 - 82
Target Start/End: Original strand, 42377102 - 42377182
Alignment:
| Q |
2 |
ctggtttgttcatcatttctgccattgcaaactcaacggtattggaggatgtgtctgatccaccaagtaccatgtcctgtt |
82 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||| | |||||||||||||| |
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| T |
42377102 |
ctggtttgttcatcatttctgccattacaaactcaattgtgttggaggatgtgtctgatccacccactaccatgtcctgtt |
42377182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 7 - 91
Target Start/End: Original strand, 42387455 - 42387539
Alignment:
| Q |
7 |
ttgttcatcatttctgccattgcaaactcaacggtattggaggatgtgtctgatccaccaagtaccatgtcctgttcatacaaac |
91 |
Q |
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|||| |||||||| ||| ||| ||||||||| || ||||||||||||||||||||||| | |||||||||||||||||| |||| |
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| T |
42387455 |
ttgtccatcatttatgctattacaaactcaattgtgttggaggatgtgtctgatccacccactaccatgtcctgttcatataaac |
42387539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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