View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19496_high_2 (Length: 433)

Name: NF19496_high_2
Description: NF19496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19496_high_2
NF19496_high_2
[»] chr6 (15 HSPs)
chr6 (18-433)||(1838920-1839335)
chr6 (241-408)||(1822205-1822372)
chr6 (18-324)||(6465064-6465368)
chr6 (18-303)||(6473207-6473490)
chr6 (18-165)||(1828181-1828328)
chr6 (29-303)||(6526111-6526386)
chr6 (18-324)||(1831932-1832236)
chr6 (18-297)||(6457104-6457381)
chr6 (18-259)||(1827215-1827440)
chr6 (232-303)||(13035906-13035977)
chr6 (69-162)||(1842091-1842184)
chr6 (124-226)||(1845886-1845983)
chr6 (18-139)||(6505211-6505332)
chr6 (254-304)||(1827156-1827206)
chr6 (333-409)||(1841816-1841892)
[»] chr7 (3 HSPs)
chr7 (205-298)||(3753997-3754092)
chr7 (234-302)||(4046177-4046245)
chr7 (203-275)||(46383329-46383403)


Alignment Details
Target: chr6 (Bit Score: 388; Significance: 0; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 18 - 433
Target Start/End: Complemental strand, 1839335 - 1838920
Alignment:
Q  18 gcattcactgattcactagtgctatcttgatttctaccatcagcgaactctgttagccctccggcccaagagtgtaatttataaagatctaaacacctta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1839335 gcattcactgattcactagtgctatcttgatttctaccatcagcgaactctgttagccctccggcccaagagtgtaatttataaagatctaaacacctta 1839236  T
Q  118 gatgcgtgtaattagagttcgagtttctacttgaggtcataaaatttgcaatgagtgaataggtttgaggcttaattaaattttataccccaaattggat 217  Q
    ||  | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1839235 gacacatgtaattagagttcgaatttctacttgaggtcataaaatttgcaatgagtgaataggtttgaggcttaattaaattttataccccaaattggat 1839136  T
Q  218 caatctttgtgcactgcaattcaatagagaaactatcctaaatgataatgatgctcatcataaattccaaacccgaaatcagcaccagtcatattagacc 317  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1839135 caatctttgtgcactgcaattcattagagaaactatcctaaatgataatgatgctcatcataaattccaaacccgaaatcagcaccagtcatattagacc 1839036  T
Q  318 cttgtttaaaaaattaatgccaaccttgcagccctggcaatcaatttaccataaaagtatgaagaatttgatattattgcaaatgagttcaattattcaa 417  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1839035 cttgtttaaacaattaatgccaaccttgcagccctggcaatcaatttaccataaaagtatgaagaatttgatattattgcaaatgagttcaattattcaa 1838936  T
Q  418 cgtctttcaagagagc 433  Q
    | ||||||||||||||    
T  1838935 catctttcaagagagc 1838920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 241 - 408
Target Start/End: Complemental strand, 1822372 - 1822205
Alignment:
Q  241 atagagaaactatcctaaatgataatgatgctcatcataaattccaaacccgaaatcagcaccagtcatattagacccttgtttaaaaaattaatgccaa 340  Q
    ||||||||| ||| |||||||||||||||| |||| |||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1822372 atagagaaagtattctaaatgataatgatggtcattataaattcaaaacccaaaatcagcaccagtcatattagacccttgtttaaagaattaatgccaa 1822273  T
Q  341 ccttgcagccctggcaatcaatttaccataaaagtatgaagaatttgatattattgcaaatgagttca 408  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||| | |||||||| |||||||||    
T  1822272 ccttgcagccctggcaatcaatttactataaaagtaagaagaatttgttgttattgcagatgagttca 1822205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 18 - 324
Target Start/End: Original strand, 6465064 - 6465368
Alignment:
Q  18 gcattcactgattcactagtgctatcttgatttctaccatcagcgaactctgttagccctccggcccaagagtgtaatttataaagatctaaacacctta 117  Q
    |||||||| | ||||||||| || ||||||||||| |||||  ||||||| |||| |||||||||||| || || |||||| ||||||| ||||||||||    
T  6465064 gcattcacagcttcactagtactctcttgatttcttccatctccgaactcagttaaccctccggcccacgaatgcaatttaaaaagatcgaaacacctta 6465163  T
Q  118 gatgcgtgtaattagagttcgagtttctacttgaggtcataaaatttgcaatgagtgaataggtttgaggcttaattaaattttataccccaaattggat 217  Q
    || | |||||||| |||||||  ||||| ||  || |||||||||  || ||||||||||| | |||||||    ||| | ||  |||||||||||||||    
T  6465164 gacgggtgtaattcgagttcggatttctgctcaagttcataaaatcagccatgagtgaataagcttgaggc----ttatacttcctaccccaaattggat 6465259  T
Q  218 caatctttg--tgcactgcaattcaatagagaaactatcctaaatgataatgatgctcatcataaattccaaacccgaaatcagcaccagtcatattaga 315  Q
    |||||||||   |||| ||||||| ||||||||| |||||||||||||||||||| |||| ||||| ||| || || ||||||||||||||   ||||||    
T  6465260 caatctttgcaagcacagcaattccatagagaaagtatcctaaatgataatgatgatcattataaactccgaatccaaaatcagcaccagtatcattaga 6465359  T
Q  316 cccttgttt 324  Q
    |||||||||    
T  6465360 cccttgttt 6465368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 18 - 303
Target Start/End: Complemental strand, 6473490 - 6473207
Alignment:
Q  18 gcattcactgattcactagtgctatcttgatttctaccatcagcgaactctgttagccctccggcccaagagtgtaatttataaagatctaaacacctta 117  Q
    |||||||| | ||||||||| || ||||| ||||| ||||| || ||||| |||| ||||||||||||||| || | ||| |||||||| ||||||||||    
T  6473490 gcattcacggcttcactagtactctcttggtttcttccatccgcaaactcggttaaccctccggcccaagaatgcagtttgtaaagatcaaaacacctta 6473391  T
Q  118 gatgcgtgtaattagagttcgagtttctacttgaggtcataaaatttgcaatgagtgaataggtttgaggcttaattaaattttataccccaaattggat 217  Q
     | | || ||||| || ||||||||| | ||  |||||||||||| | | ||||||| ||||| ||||||||||     ||||  ||||||||| |||||    
T  6473390 aaggagtataatttgaattcgagtttttgctcaaggtcataaaatcttccatgagtgcataggcttgaggcttat----atttcttaccccaaactggat 6473295  T
Q  218 caatctttgt--gcactgcaattcaatagagaaactatcctaaatgataatgatgctcatcataaattccaaacccgaaatcagcacc 303  Q
    ||||||| |   |||||||||||| ||||||||| || ||||||||||||||||| |||| ||||||||| |||||||||||||||||    
T  6473294 caatcttagcaagcactgcaattccatagagaaagtaacctaaatgataatgatgatcattataaattccgaacccgaaatcagcacc 6473207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 18 - 165
Target Start/End: Complemental strand, 1828328 - 1828181
Alignment:
Q  18 gcattcactgattcactagtgctatcttgatttctaccatcagcgaactctgttagccctccggcccaagagtgtaatttataaagatctaaacacctta 117  Q
    ||||||||||  ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |    
T  1828328 gcattcactgcatcactagtgctctcttgatttctaccatcagcgaattctgttagccctccggcccaagagtgtaatttataaagatcgaaacacctca 1828229  T
Q  118 gatgcgtgtaattagagttcgagtttctacttgaggtcataaaatttg 165  Q
    ||  ||||||||||  ||| |||||||||||  ||||||  |||||||    
T  1828228 gacacgtgtaattattgttagagtttctactcaaggtcagcaaatttg 1828181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 29 - 303
Target Start/End: Original strand, 6526111 - 6526386
Alignment:
Q  29 ttcactagtgctatcttgatttctaccatcagcgaactctgttagccctccggcccaagagtgtaatttataaagatctaaacaccttagatgcgtgtaa 128  Q
    |||||| || || ||||||||||| ||||||| ||| |||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||    
T  6526111 ttcactggtactctcttgatttcttccatcagtgaattctgttagccctccagcccaagagtgtaatttatacagatcgaaacaccttagatgcgtgtaa 6526210  T
Q  129 t---tagagttcgagtttctacttgaggtcataaaatttgcaatgagtgaataggtttgaggcttaattaaattttataccccaaattggatcaatcttt 225  Q
    |   ||| ||| || ||||| ||     |||||||||  || ||||  ||||||| |||||    | ||| | ||| |||||||||| |||||||||||     
T  6526211 taactagggtttgaatttctgctcagattcataaaatcagccatgacagaataggcttgag----acttatactttctaccccaaataggatcaatctta 6526306  T
Q  226 g--tgcactgcaattcaatagagaaactatcctaaatgataatgatgctcatcataaattccaaacccgaaatcagcacc 303  Q
    |   |||||||||||| ||||||||| |||||||||||||||||||| |||| ||||| ||| ||||| |||||||||||    
T  6526307 gcaagcactgcaattccatagagaaagtatcctaaatgataatgatgatcattataaactccgaacccaaaatcagcacc 6526386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 324
Target Start/End: Complemental strand, 1832236 - 1831932
Alignment:
Q  18 gcattcactgattcactagtgctatcttgatttctaccatcagcgaactctgttagccctccggcccaagagtgtaatttataaagatctaaacacctta 117  Q
    ||||||| || |||||||||| | ||||| ||||| ||||||| ||| ||  ||| |||| | ||| ||||| ||| |||| |||| || ||||| | |     
T  1832236 gcattcattgcttcactagtgttctcttggtttcttccatcagtgaattcacttacccctacagcctaagagcgtagtttacaaagctcaaaacatcatt 1832137  T
Q  118 gatgcgtgtaattagagttcgagtttctacttgaggtcataaaatttgcaatgagtgaataggtttgaggcttaattaaattttataccccaaattggat 217  Q
    || | | |||||| ||||| || ||||||||  ||||||||||||   ||||||||||||||| ||||||||||     | | | |||||||||||||||    
T  1832136 gacgtgcgtaatttgagtttgaatttctactcaaggtcataaaatcctcaatgagtgaataggcttgaggcttat----actctctaccccaaattggat 1832041  T
Q  218 caatctttgt--gcactgcaattcaatagagaaactatcctaaatgataatgatgctcatcataaattccaaacccgaaatcagcaccagtcatattaga 315  Q
    |||||||||   |||||||||||| | ||||||| |||||||||||||||||||| || | || ||||||||||||||||||| |||||||  |||||||    
T  1832040 caatctttgcaagcactgcaattccaaagagaaagtatcctaaatgataatgatggtcgttattaattccaaacccgaaatcaacaccagtattattaga 1831941  T
Q  316 cccttgttt 324  Q
    |||||||||    
T  1831940 cccttgttt 1831932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 18 - 297
Target Start/End: Original strand, 6457104 - 6457381
Alignment:
Q  18 gcattcactgattcactagtgctatcttgatttctaccatcagcgaactctgttagccctccggcccaagagtgtaatttataaagatctaaacacctta 117  Q
    |||||||| | ||||||||| || ||||||||||| ||||| || || ||  |||| ||||| |||||||| || |||||||||||||| ||||||||||    
T  6457104 gcattcacagcttcactagtactctcttgatttcttccatctgcaaattcgattagtcctccagcccaagaatgaaatttataaagatcgaaacacctta 6457203  T
Q  118 gatgcgtgtaattagagttcgagtttctacttgaggtcataaaatttgcaatgagtgaataggtttgaggcttaattaaattttataccccaaattggat 217  Q
     | | || ||||| ||||| || ||||| | | || |||  |||| ||| ||||||||||| | |||||| |||     | ||| | ||||||  |||||    
T  6457204 aacgtgtataatttgagtttgattttcttcctaagttcaggaaatctgccatgagtgaataagcttgaggtttat----actttcttccccaagctggat 6457299  T
Q  218 caatctttgt--gcactgcaattcaatagagaaactatcctaaatgataatgatgctcatcataaattccaaacccgaaatc 297  Q
    |||||||||   |||||||||||| ||||||||| |||||||||||||||||||| |||| |||||| || ||||| |||||    
T  6457300 caatctttgcaagcactgcaattccatagagaaagtatcctaaatgataatgatgatcattataaataccgaacccaaaatc 6457381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 1827440 - 1827215
Alignment:
Q  18 gcattcactgattcactagtgctatcttgatttctaccatcagcgaactctgttagccctccggcccaagagtgtaatttataaagatctaaacacctta 117  Q
    ||||||| || |||||||| ||| ||||||||||| ||||||| ||| || ||||||||||| ||||||||||||| |||| ||||  | ||| ||||||    
T  1827440 gcattcattgcttcactagcgctctcttgatttcttccatcagtgaattcagttagccctccagcccaagagtgtagtttacaaagcacaaaatacctta 1827341  T
Q  118 gatgcgtgtaattagagttcgagtttctacttgaggtcataaaatttgcaatgagtgaataggtttgaggcttaattaaattttataccccaaattggat 217  Q
    ||              |||||| |||||||| |||||||||||||  |||||||||||||||| ||||||||||     ||||| |||||||||||| ||    
T  1827340 ga--------------gttcgaatttctactcgaggtcataaaatcggcaatgagtgaataggcttgaggcttat----attttctaccccaaattgaat 1827259  T
Q  218 caatctttgt--gcactgcaattcaatagagaaactatcctaaa 259  Q
    |||||||||   |||||||||||| ||||||||| |||||||||    
T  1827258 caatctttgcaagcactgcaattcgatagagaaagtatcctaaa 1827215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 232 - 303
Target Start/End: Complemental strand, 13035977 - 13035906
Alignment:
Q  232 tgcaattcaatagagaaactatcctaaatgataatgatgctcatcataaattccaaacccgaaatcagcacc 303  Q
    |||||||| ||||||||| || ||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  13035977 tgcaattccatagagaaagtaacctaaatgataatgatggtcattataaattccaaacccgaaatcagcacc 13035906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 69 - 162
Target Start/End: Complemental strand, 1842184 - 1842091
Alignment:
Q  69 gttagccctccggcccaagagtgtaatttataaagatctaaacaccttagatgcgtgtaattagagttcgagtttctacttgaggtcataaaat 162  Q
    ||||||||||| || ||||||||||||||| ||||||| ||||||||||||  ||||| ||||||||| || ||||||||  ||||||||||||    
T  1842184 gttagccctccagctcaagagtgtaatttacaaagatcgaaacaccttagacacgtgtcattagagtttgaatttctactcaaggtcataaaat 1842091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 124 - 226
Target Start/End: Complemental strand, 1845983 - 1845886
Alignment:
Q  124 tgtaattagagttcgagtttctacttgaggtcataaaatttgcaatgagtgaataggtttgaggcttaattaaattttataccccaaattggatcaatct 223  Q
    ||||||||||||| || ||||||||  |||||||||||| |||||||||| |||||| |||||||    |||||||||  ||||||||||||||||||||    
T  1845983 tgtaattagagtttgaatttctactc-aggtcataaaatctgcaatgagtaaataggcttgaggc----ttaaattttccaccccaaattggatcaatct 1845889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 6505211 - 6505332
Alignment:
Q  18 gcattcactgattcactagtgctatcttgatttctaccatcagcgaactctgttagccctccggcccaagagtgtaatttataaagatctaaacacctta 117  Q
    |||||||| | ||||||||| || |||||||| || ||||| |  ||||| ||||||||||||||||| || || || || |||||||| ||||||||||    
T  6505211 gcattcacagcttcactagtactctcttgattccttccatctgaaaactcggttagccctccggcccacgaatgcaacttgtaaagatcgaaacacctta 6505310  T
Q  118 gatgcgtgtaattagagttcga 139  Q
     | |||| ||||| ||||||||    
T  6505311 aacgcgtataatttgagttcga 6505332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 254 - 304
Target Start/End: Complemental strand, 1827206 - 1827156
Alignment:
Q  254 cctaaatgataatgatgctcatcataaattccaaacccgaaatcagcacca 304  Q
    ||||||||||||||||| || | ||||||||||||||||||||||||||||    
T  1827206 cctaaatgataatgatggtcgttataaattccaaacccgaaatcagcacca 1827156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 409
Target Start/End: Complemental strand, 1841892 - 1841816
Alignment:
Q  333 aatgccaaccttgcagccctggcaatcaatttaccataaaagtatgaagaatttgatattattgcaaatgagttcaa 409  Q
    |||||| ||| |||| |||| |||||  |||||||||||||||| |||||||||  | ||||| || ||||||||||    
T  1841892 aatgccgaccatgcaaccctagcaatagatttaccataaaagtaagaagaatttcttgttatttcagatgagttcaa 1841816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 205 - 298
Target Start/End: Complemental strand, 3754092 - 3753997
Alignment:
Q  205 ccccaaattggatcaatctttgt--gcactgcaattcaatagagaaactatcctaaatgataatgatgctcatcataaattccaaacccgaaatca 298  Q
    ||||||| ||||||||||||||   | || ||||||| ||| ||||| || ||||||||||||||||| |||| |||||||||||| || ||||||    
T  3754092 ccccaaaatggatcaatctttgcaagaacagcaattccataaagaaaataacctaaatgataatgatgatcattataaattccaaaaccaaaatca 3753997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 302
Target Start/End: Original strand, 4046177 - 4046245
Alignment:
Q  234 caattcaatagagaaactatcctaaatgataatgatgctcatcataaattccaaacccgaaatcagcac 302  Q
    |||||| ||| ||||| || ||||||||||||||||| |||| ||| |||||||| || ||||||||||    
T  4046177 caattccataaagaaaataacctaaatgataatgatgatcattatacattccaaaaccaaaatcagcac 4046245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 275
Target Start/End: Original strand, 46383329 - 46383403
Alignment:
Q  203 taccccaaattggatcaatctttgtg--cactgcaattcaatagagaaactatcctaaatgataatgatgctcat 275  Q
    |||||||||| ||||||||||| | |  ||||| ||||| ||||||| | |||||||||||||||||||| ||||    
T  46383329 taccccaaataggatcaatcttggcgagcactgtaattccatagagagaatatcctaaatgataatgatgatcat 46383403  T

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