View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19496_high_5 (Length: 304)
Name: NF19496_high_5
Description: NF19496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19496_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 7 - 190
Target Start/End: Complemental strand, 43736235 - 43736052
Alignment:
| Q |
7 |
tcgaagaatataagagttaagttgtgaagcaaccatttgtatccgcttgtatttgtcaaacagacattaatgagttcactgtcttcatcttgaggatacg |
106 |
Q |
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| T |
43736235 |
tcgaaaaaaataagagttaagttgtgaaacaaccatttgtatccgcttgtatttgtcaaacagacattaatgagttcactgtcttcatcttgaggatacg |
43736136 |
T |
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| Q |
107 |
taggaccatgagataccactcttgaggggatcaccattagaatttgaaacaatgttttagcatcttaaaagtatagtgttttgt |
190 |
Q |
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| T |
43736135 |
taggaccatgagataccactcttaaggggatcaccattagaatttgaaacaatgttctagcatcttaaaagtatagtgttttgt |
43736052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 225 - 288
Target Start/End: Complemental strand, 43736055 - 43735992
Alignment:
| Q |
225 |
ttgtgttccatccaaaacataaactcttgtgcccaaagaacgtaacagtttcaaatattaatca |
288 |
Q |
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| T |
43736055 |
ttgtgttccatccaaaacataaactcttgtgcccaaagaacgtaacagtttcaaatattaatca |
43735992 |
T |
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