View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19496_high_6 (Length: 282)
Name: NF19496_high_6
Description: NF19496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19496_high_6 |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0430 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 39 - 282
Target Start/End: Original strand, 54630988 - 54631228
Alignment:
| Q |
39 |
gtgggtaggataaatgaaagtgaaaaaagaggattgggataagtttctctacacacaacaaagttaccaaaccaaggaaatttggaagaagaagcgaata |
138 |
Q |
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| T |
54630988 |
gtgggtaggataaatgaaagtgaaaaaagaggattgggataagtttctctagacacaa---agttaccaaaccaaggaaatttggaagaagaagcgaata |
54631084 |
T |
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| Q |
139 |
tggaaggtggtagcatgctgcacgatccgtacgaaccctttcgtatttccacttcccaacaagaacttctcaacagcgttcccttcgtcggagacactct |
238 |
Q |
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| T |
54631085 |
tggaaggtggtagcatgctgcacgatccgtacgaaccctttcgtatttccacttcccaacaagaacttctcaacagcgttcccttcgtcggagacactct |
54631184 |
T |
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| Q |
239 |
cacttcaccctgcaactgcaacaacaacaaccaccaccacgatg |
282 |
Q |
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| T |
54631185 |
cacttcaccctgcaactgcaacaacaacaaccaccaccacgatg |
54631228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0430 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0430
Description:
Target: scaffold0430; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 163 - 263
Target Start/End: Complemental strand, 5959 - 5859
Alignment:
| Q |
163 |
atccgtacgaaccctttcgtatttccacttcccaacaagaacttctcaacagcgttcccttcgtcggagacactctcacttcaccctgcaactgcaacaa |
262 |
Q |
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| T |
5959 |
atccatacgaatcctttcgtatatccacttcccaagaagaacttgtcaagagcatccccttcattggagacactatcacttcacactacaattgcaacaa |
5860 |
T |
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| Q |
263 |
c |
263 |
Q |
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| T |
5859 |
c |
5859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 237 - 278
Target Start/End: Complemental strand, 45314105 - 45314064
Alignment:
| Q |
237 |
ctcacttcaccctgcaactgcaacaacaacaaccaccaccac |
278 |
Q |
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| T |
45314105 |
ctcacttcaccgtgcaactgcaacaacaacaacctccaccac |
45314064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 153
Target Start/End: Complemental strand, 45314178 - 45314148
Alignment:
| Q |
123 |
gaagaagaagcgaatatggaaggtggtagca |
153 |
Q |
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| T |
45314178 |
gaagaagaagcgaatatggaaggtggtagca |
45314148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 76
Target Start/End: Complemental strand, 45314245 - 45314209
Alignment:
| Q |
39 |
gtgggtaggataaatgaaagtgaaaaaagaggattggg |
76 |
Q |
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| T |
45314245 |
gtgggtaggataaatgaaagt-aaaaaagaggattggg |
45314209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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