View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19496_low_3 (Length: 411)
Name: NF19496_low_3
Description: NF19496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19496_low_3 |
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| [»] chr2 (9 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 373; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 7 - 411
Target Start/End: Complemental strand, 35322852 - 35322448
Alignment:
| Q |
7 |
gaagcttcatgcaatgccattgtatcttgtgctgatattctagcacttgcagcaagagatggtgtatttctggtgagtggtccattactccattccaatt |
106 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
35322852 |
gaagcttcatgcaatgccactgtatcttgtgctgatattctagcacttgcagcaagagatggagtatttctggtgagtggtccattactccatgccaatt |
35322753 |
T |
|
| Q |
107 |
tctttcttctgatgcaaaacatattagaaaaaattatactccgtctcgctgagagaaacatgagttacactttctcccatattaatagttttatttttta |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
35322752 |
actttcttctgatgcaaaacatattagaaaaaattatactccgtctagctgagagaaacttgagttacactttctcccatattaatagttttatttttta |
35322653 |
T |
|
| Q |
207 |
tttctagcttggaggaccaacatgggtagtaccacttggaagaagagatgcaagaacagcaagccaaagtgcagcaaatagtcaaatcccttcaccattt |
306 |
Q |
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|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35322652 |
tttgtagcttggaggaccaacatgggtagtaccacttggaagaagagatgcaagaacagcaagccaaagtgcagcaaatagtcaaatcccttcaccattt |
35322553 |
T |
|
| Q |
307 |
tctgacctttccactctcaccaaaatgtttacagacaagggtttaactgcaagtgacctcacagtactttctggtgcacacaccataggccaaggagagt |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35322552 |
tctgacctttccactctcaccaaaatgtttacagacaagggtctaactgcaagtgacctcacagtactttctggtgcacacaccataggccaaggagagt |
35322453 |
T |
|
| Q |
407 |
gccaa |
411 |
Q |
| |
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||||| |
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| T |
35322452 |
gccaa |
35322448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 7 - 411
Target Start/End: Complemental strand, 35307851 - 35307447
Alignment:
| Q |
7 |
gaagcttcatgcaatgccattgtatcttgtgctgatattctagcacttgcagcaagagatggtgtatttctggtgagtggtccattactccattccaatt |
106 |
Q |
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|||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
35307851 |
gaagcttcttgcaatgccactgtatcttgtgctgatattctagcacttgcagcaagagatggagtatttctggtgagtggtccattactccattccaatt |
35307752 |
T |
|
| Q |
107 |
tctttcttctgatgcaaaacatattagaaaaaattatactccgtctcgctgagagaaacatgagttacactttctcccatattaatagttttatttttta |
206 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
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| T |
35307751 |
tctttcttctgatgcaaaacatattagaaaaaattatactccatctcgctgagagaaacttgagttacactttcacccatattaatagttttatttttta |
35307652 |
T |
|
| Q |
207 |
tttctagcttggaggaccaacatgggtagtaccacttggaagaagagatgcaagaacagcaagccaaagtgcagcaaatagtcaaatcccttcaccattt |
306 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35307651 |
tttgtagcttggaggaccaacatgggtagtaccacttggaagaagagatgcaagaacagcaagccaaagtgcagcaaatagtcaaatcccttcaccattt |
35307552 |
T |
|
| Q |
307 |
tctgacctttccactctcaccaaaatgtttacagacaagggtttaactgcaagtgacctcacagtactttctggtgcacacaccataggccaaggagagt |
406 |
Q |
| |
|
|||||||||||||||||||| | ||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35307551 |
tctgacctttccactctcactacaatgttttcagccaagggtctaactgcaagtgacctcacagtactttctggtgcacacaccataggccaaggagagt |
35307452 |
T |
|
| Q |
407 |
gccaa |
411 |
Q |
| |
|
||||| |
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| T |
35307451 |
gccaa |
35307447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 206 - 407
Target Start/End: Complemental strand, 35311998 - 35311797
Alignment:
| Q |
206 |
atttctagcttggaggaccaacatgggtagtaccacttggaagaagagatgcaagaacagcaagccaaagtgcagcaaatagtcaaatcccttcaccatt |
305 |
Q |
| |
|
|||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||| |
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| T |
35311998 |
atttgtagcttggaggaccctcatggacagtaccacttggaagaagagatgcaagaacagcaaatcaaagtgcagcaaatagccaaatccctagaccatc |
35311899 |
T |
|
| Q |
306 |
ttctgacctttccactctcaccaaaatgtttacagacaagggtttaactgcaagtgacctcacagtactttctggtgcacacaccataggccaaggagag |
405 |
Q |
| |
|
| | |||| ||| ||||| | ||||||| || ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35311898 |
ctttaacctaaccagactcactacaatgtttttagccaagggtctaactgcaagtgatctcacagtactttctggtgcacacaccataggccaaggagag |
35311799 |
T |
|
| Q |
406 |
tg |
407 |
Q |
| |
|
|| |
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|
| T |
35311798 |
tg |
35311797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 211 - 400
Target Start/End: Complemental strand, 35280504 - 35280315
Alignment:
| Q |
211 |
tagcttggaggaccaacatgggtagtaccacttggaagaagagatgcaagaacagcaagccaaagtgcagcaaatagtcaaatcccttcaccattttctg |
310 |
Q |
| |
|
||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||| ||||| |
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| T |
35280504 |
tagcttggaggtccttcatggatagtaccacttggaagaagagatgcaagaacagcaagtcaaagtgcagcaaacacccaaatcccttcaccagcttctg |
35280405 |
T |
|
| Q |
311 |
acctttccactctcaccaaaatgtttacagacaagggtttaactgcaagtgacctcacagtactttctggtgcacacaccataggccaag |
400 |
Q |
| |
|
|||| ||||| ||||| ||||||||| | |||| ||| |||| ||| ||||| ||||| |||||||||||||||||||||||||||| |
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| T |
35280404 |
acctatccacactcactaaaatgtttcaaaacaaaggtctaacattaagagaccttacagtcctttctggtgcacacaccataggccaag |
35280315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 211 - 400
Target Start/End: Complemental strand, 35289849 - 35289660
Alignment:
| Q |
211 |
tagcttggaggaccaacatgggtagtaccacttggaagaagagatgcaagaacagcaagccaaagtgcagcaaatagtcaaatcccttcaccattttctg |
310 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| || ||||| ||||| |
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|
| T |
35289849 |
tagcttggaggtccttcatgggtagtaccacttggaagaagagatgcaagaacagcaagtcaaagtgcagcaaatagccaaattccaggaccatcttctg |
35289750 |
T |
|
| Q |
311 |
acctttccactctcaccaaaatgtttacagacaagggtttaactgcaagtgacctcacagtactttctggtgcacacaccataggccaag |
400 |
Q |
| |
|
|||| ||||| ||||| | ||||||| | |||| ||| |||| || |||||| || || ||||||||||||||||||||||| |||| |
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|
| T |
35289749 |
acctatccacactcactaccatgtttagaaacaaaggtctaacattaaatgaccttactgtcctttctggtgcacacaccataggtcaag |
35289660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 211 - 395
Target Start/End: Complemental strand, 35275737 - 35275553
Alignment:
| Q |
211 |
tagcttggaggaccaacatgggtagtaccacttggaagaagagatgcaagaacagcaagccaaagtgcagcaaatagtcaaatcccttcaccattttctg |
310 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||| ||||| |
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| T |
35275737 |
tagcttggaggaccctcatgggcagtaccacttggaagaagagatgcaagaacagcaagtcaaagtgcagcaaatagccaaatccctggaccatcttctg |
35275638 |
T |
|
| Q |
311 |
acctttccactctcaccaaaatgtttacagacaagggtttaactgcaagtgacctcacagtactttctggtgcacacaccatagg |
395 |
Q |
| |
|
|||| || || ||||| | ||||||| | |||| || |||| || |||||| ||||| || |||||||||||||||||||| |
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|
| T |
35275637 |
acctatcgacactcactagaatgtttcaaaacaaaagtctaacattaaatgaccttacagtcctatctggtgcacacaccatagg |
35275553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 7 - 92
Target Start/End: Complemental strand, 35312639 - 35312554
Alignment:
| Q |
7 |
gaagcttcatgcaatgccattgtatcttgtgctgatattctagcacttgcagcaagagatggtgtatttctggtgagtggtccatt |
92 |
Q |
| |
|
||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||| ||| |||||||||||| |||||| |
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|
| T |
35312639 |
gaagcttcatgcaatgccactgtctcttgtgccgatattctagcacttgcagcaagagatggagtagttctggtgagtgatccatt |
35312554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 35281884 - 35281823
Alignment:
| Q |
7 |
gaagcttcatgcaatgccattgtatcttgtgctgatattctagcacttgcagcaagagatgg |
68 |
Q |
| |
|
|||||| | |||| ||||| ||| ||||||||||||||||| ||||||||| | |||||||| |
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| T |
35281884 |
gaagctgcttgcagtgccactgtctcttgtgctgatattcttgcacttgcaactagagatgg |
35281823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 35290729 - 35290668
Alignment:
| Q |
7 |
gaagcttcatgcaatgccattgtatcttgtgctgatattctagcacttgcagcaagagatgg |
68 |
Q |
| |
|
|||||| | |||| ||||| ||| ||||||||||||||||| ||||||||| | |||||||| |
|
|
| T |
35290729 |
gaagctgcttgcagtgccactgtctcttgtgctgatattcttgcacttgcaactagagatgg |
35290668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 212 - 266
Target Start/End: Original strand, 36190635 - 36190689
Alignment:
| Q |
212 |
agcttggaggaccaacatgggtagtaccacttggaagaagagatgcaagaacagc |
266 |
Q |
| |
|
|||||||||| |||||||||| || ||||||||||||||||||||||||||| |
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| T |
36190635 |
agcttggaggcccaacatgggatgtgaaacttggaagaagagatgcaagaacagc |
36190689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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