View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19496_low_4 (Length: 326)
Name: NF19496_low_4
Description: NF19496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19496_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 312
Target Start/End: Original strand, 32246649 - 32246944
Alignment:
| Q |
18 |
actggaaagctatgttaagctttatattactccaacacaactgaaatattacctgaaacctttcaaggtgattgtaatttcttattaggatgtaatagaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32246649 |
actggaaagctatgttaagctttatattactccagcacaactgaaatattacctgaaacctttcaaggtgattgtaatttcttattaggatgtaatagaa |
32246748 |
T |
|
| Q |
118 |
cacttgttatcaaaaacctttgctgcatagtagagtgg-caaatgagcactagcgttaactgaactttcattgacttttgtttcgttaaaagcaatgaaa |
216 |
Q |
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||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32246749 |
cacttgttatcaaaaaccttttctgcatagtagagtgggcaaatgagcactagcgttaactgaactttcattgacttttgtttcgttaaaagcaatgaaa |
32246848 |
T |
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| Q |
217 |
gccaaagtaattgttgatttcttagctaactattttgttgatagtgatgatgatttcgaacaagaatacatatgtttgaatccttggaaactatat |
312 |
Q |
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| T |
32246849 |
gccaaagtaattgttgatttctttgctaactattttgttgatagtgatgatgatttcgaacaagaatacatatgtttgaatccttggaaactatat |
32246944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 312
Target Start/End: Original strand, 32251726 - 32252021
Alignment:
| Q |
18 |
actggaaagctatgttaagctttatattactccaacacaactgaaatattacctgaaacctttcaaggtgattgtaatttcttattaggatgtaatagaa |
117 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||| ||| |||||||| |||| | || ||| ||||| || |
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| T |
32251726 |
actggaaagctatgttaagctttatattactcgaacacaactgaattattacctaaaacctttcgaggggattgtaacttctcaatatgatctaataaaa |
32251825 |
T |
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| Q |
118 |
cacttgttatcaaaaacctttgctgcatagtagagtgg-caaatgagcactagcgttaactgaactttcattgacttttgtttcgttaaaagcaatgaaa |
216 |
Q |
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|||||||| ||||||||| || |||||||||||||||| |||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
32251826 |
cacttgttctcaaaaaccatttctgcatagtagagtgggcaaaggagcactagcgttaactgaaccttcattgacttatgtttcgttaaaagcaatgaaa |
32251925 |
T |
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| Q |
217 |
gccaaagtaattgttgatttcttagctaactattttgttgatagtgatgatgatttcgaacaagaatacatatgtttgaatccttggaaactatat |
312 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||| |||||||||||||||| |
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| T |
32251926 |
gccaaaataattgttgatttcttagctaactattttgttgatagtgatgatgatttcaaacaagattacataagtttgagtccttggaaactatat |
32252021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 120 - 276
Target Start/End: Complemental strand, 25976877 - 25976719
Alignment:
| Q |
120 |
cttgttatcaaaaacct-ttgctgcatagtagagtgg-caaatgagcactagcgttaactgaactttcattgacttttgtttcgttaaaagcaatgaaag |
217 |
Q |
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|||||||||||||||| || ||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
25976877 |
cttgttatcaaaaaccaatttatgcatagtagagtgggcaaatgagcactagttttaactgaactttcattgacttatgtttcgctaaaagcaatgaaag |
25976778 |
T |
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| Q |
218 |
ccaaagtaattgttgatttcttagctaactattttgttgatagtgatgatgatttcgaa |
276 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25976777 |
ccaaagtaatttttgatttcttagctaactattttgttgatagtgatgatgatttcgaa |
25976719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 284
Target Start/End: Complemental strand, 5558767 - 5558704
Alignment:
| Q |
221 |
aagtaattgttgatttcttagctaactattttgttgatagtgatgatgatttcgaacaagaata |
284 |
Q |
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|||||||||||||||| |||||||| |||| ||||||| |||||||||| ||||||||||| |
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| T |
5558767 |
aagtaattgttgatttattagctaattattccattgatagcaatgatgattttgaacaagaata |
5558704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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