View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19496_low_5 (Length: 323)

Name: NF19496_low_5
Description: NF19496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19496_low_5
NF19496_low_5
[»] chr6 (19 HSPs)
chr6 (1-289)||(1838660-1838942)
chr6 (3-222)||(1841591-1841812)
chr6 (25-159)||(6515867-6516002)
chr6 (3-154)||(13035513-13035665)
chr6 (19-168)||(6472800-6472950)
chr6 (229-287)||(15535242-15535300)
chr6 (230-287)||(19664667-19664724)
chr6 (4-168)||(6520324-6520489)
chr6 (234-278)||(15540765-15540809)
chr6 (3-112)||(1822094-1822200)
chr6 (228-275)||(27649300-27649347)
chr6 (229-284)||(32427489-32427544)
chr6 (81-211)||(6528532-6528667)
chr6 (131-207)||(6526733-6526810)
chr6 (294-323)||(1838599-1838628)
chr6 (95-159)||(6505830-6505895)
chr6 (294-323)||(14790742-14790771)
chr6 (294-323)||(14795770-14795799)
chr6 (64-108)||(6526688-6526732)
[»] chr5 (4 HSPs)
chr5 (228-287)||(14616428-14616487)
chr5 (225-283)||(7649938-7649996)
chr5 (294-323)||(7650034-7650063)
chr5 (294-323)||(34405972-34406001)
[»] chr2 (6 HSPs)
chr2 (229-287)||(23673345-23673403)
chr2 (228-287)||(36327113-36327172)
chr2 (227-275)||(16295097-16295145)
chr2 (229-287)||(32575685-32575743)
chr2 (229-283)||(24384925-24384981)
chr2 (229-287)||(32074156-32074216)
[»] chr1 (9 HSPs)
chr1 (229-287)||(13496174-13496232)
chr1 (229-284)||(39546431-39546486)
chr1 (229-287)||(16190179-16190237)
chr1 (229-287)||(32505857-32505915)
chr1 (294-323)||(10765043-10765072)
chr1 (294-323)||(13493386-13493415)
chr1 (294-323)||(13496111-13496140)
chr1 (294-323)||(32505953-32505982)
chr1 (113-211)||(35231149-35231251)
[»] chr7 (6 HSPs)
chr7 (229-289)||(36842937-36842997)
chr7 (229-287)||(24783596-24783654)
chr7 (229-275)||(9766000-9766046)
chr7 (294-323)||(6967271-6967300)
chr7 (294-323)||(17866446-17866475)
chr7 (294-323)||(24783532-24783561)
[»] chr4 (3 HSPs)
chr4 (229-287)||(26062690-26062748)
chr4 (227-287)||(15851479-15851539)
chr4 (294-323)||(647296-647325)
[»] chr3 (5 HSPs)
chr3 (229-287)||(13979672-13979730)
chr3 (229-287)||(46731641-46731699)
chr3 (229-289)||(26822039-26822099)
chr3 (229-287)||(3306153-3306213)
chr3 (229-287)||(30157797-30157857)
[»] scaffold0352 (1 HSPs)
scaffold0352 (229-287)||(2619-2677)


Alignment Details
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 1838942 - 1838660
Alignment:
Q  1 tattcaacgtctttcaagagagctgaaacaatttcatcattagattcttcatttacacaatttcttgaatgccaagatacagaaacatgatcgattttca 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1838942 tattcaacatctttcaagagagctgaaacaatttcatcattagattcttcatttacacaatttcttgaatgccaagatacagaaacatgatcggttttca 1838843  T
Q  101 aaatccatgaataccaacaacaccgacaggctctcgatcaaagcttttatacttgaaataactcaaaacactaaattacaatctttcttagacaaaagat 200  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |    
T  1838842 aaatccatgaataccaacagcaccgacaggctctcgatcaaagcttttatacttgaaataactcaaaacactgaattacaatctttcttagacaaaagct 1838743  T
Q  201 gaagatgaagatgaaaaggatgcgctaatgatagagatttggcaagtgaaccaaaattatcgaagtaataaataaattcgtatccacaa 289  Q
    ||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1838742 gaagatgaag------aggatgcgctaatgatagagatttggcaagtgaaccaaaattatcgaagtaataaataaattcgtatccacaa 1838660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 3 - 222
Target Start/End: Complemental strand, 1841812 - 1841591
Alignment:
Q  3 ttcaacgtctttcaagagagctgaaacaatttcatcattagattcttcatttacacaatttcttgaatgccaagatacagaaacatgatcgattttcaaa 102  Q
    |||||| | |||||| |||||||||||||||||||||| | ||||||| |||||||  || ||||||||||||| ||  ||| |||||||| ||||||||    
T  1841812 ttcaacatatttcaaaagagctgaaacaatttcatcatgaaattcttcttttacacctttgcttgaatgccaagttatggaagcatgatcggttttcaaa 1841713  T
Q  103 atccatgaat-accaacaacaccgacaggctctcgatcaaagcttttatacttgaaataactcaaaacactaa-attacaatctttcttagacaaaagat 200  Q
    |||||||||| ||||||||||  |||| |||||  || || |||||||||||| ||||||||||||||| ||| |  ||||||||||||| ||||||| |    
T  1841712 atccatgaatcaccaacaacattgacaagctctgcataaatgcttttatacttaaaataactcaaaacagtaacacaacaatctttcttatacaaaagct 1841613  T
Q  201 gaagatgaagatgaaaaggatg 222  Q
    | ||||||||||||| ||||||    
T  1841612 ggagatgaagatgaagaggatg 1841591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 25 - 159
Target Start/End: Complemental strand, 6516002 - 6515867
Alignment:
Q  25 gaaacaatttcatcattagattcttcatttacacaatttcttgaatgccaagatacagaaacatgatcgattttcaaaatccatgaat-accaacaacac 123  Q
    ||||||||||||||||  |||||||| |||| ||  || ||||||||||||| ||||||||   ||||| |||||||||||||||||| |||||||||||    
T  6516002 gaaacaatttcatcatgtgattcttcttttatacctttgcttgaatgccaagttacagaaatcggatcggttttcaaaatccatgaatcaccaacaacac 6515903  T
Q  124 cgacaggctctcgatcaaagcttttatacttgaaat 159  Q
    | ||| | |||| ||||| ||||| |||||||||||    
T  6515902 caacaaggtctccatcaatgctttgatacttgaaat 6515867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 3 - 154
Target Start/End: Complemental strand, 13035665 - 13035513
Alignment:
Q  3 ttcaacgtctttcaagagagctgaaacaatttcatcattagattcttcatttacacaatttcttgaatgccaagatacagaaacatgatcgattttcaaa 102  Q
    |||||| |||||| | ||||||||||||||||  ||||  |||||||| |||||||  || |||| |||||||| ||||||||||  |||| ||||||||    
T  13035665 ttcaacatctttcgaaagagctgaaacaattttgtcatgtgattcttcttttacacctttgcttgtatgccaagttacagaaacagaatcggttttcaaa 13035566  T
Q  103 atccatgaat-accaacaacaccgacaggctctcgatcaaagcttttatactt 154  Q
    | |||||||| ||||||||| || ||| | || | ||||| ||||||||||||    
T  13035565 agccatgaatcaccaacaactccaacaagttcaccatcaatgcttttatactt 13035513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 19 - 168
Target Start/End: Complemental strand, 6472950 - 6472800
Alignment:
Q  19 agagctgaaacaatttcatcattagattcttcatttacacaatttcttgaatgccaagatacagaaacatgatcgattttcaaaatccatgaat-accaa 117  Q
    ||||||||||||||||| ||||  |||||||| |||||||  || |||||||||||||  | ||||||| ||||  ||||||||| |||||||| |||||    
T  6472950 agagctgaaacaatttcgtcatgtgattcttcttttacacctttgcttgaatgccaagtaatagaaacaggatctgttttcaaaagccatgaatcaccaa 6472851  T
Q  118 caacaccgacaggctctcgatcaaagcttttatacttgaaataactcaaaa 168  Q
    |||| || ||| | || | ||||| |||||||||||| ||||  |||||||    
T  6472850 caactccaacaagttcaccatcaatgcttttatacttaaaatccctcaaaa 6472800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 229 - 287
Target Start/End: Complemental strand, 15535300 - 15535242
Alignment:
Q  229 tgatagagatttggcaagtgaaccaaaattatcgaagtaataaataaattcgtatccac 287  Q
    |||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  15535300 tgatggagatttcgcatgtgaaccaaaattatcgaagtaataaataaattcgtatccac 15535242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 230 - 287
Target Start/End: Original strand, 19664667 - 19664724
Alignment:
Q  230 gatagagatttggcaagtgaaccaaaattatcgaagtaataaataaattcgtatccac 287  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  19664667 gataaagatttggcaagtgaaccaaaactatcgaagtaataaataaatttgtatccac 19664724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 4 - 168
Target Start/End: Complemental strand, 6520489 - 6520324
Alignment:
Q  4 tcaacgtctttcaagagagctgaaacaatttcatcattagattcttcatttacacaatttcttgaatgccaagatacagaaacatgatcgattttcaaaa 103  Q
    ||||| |||||||| || |||||||||||||| | ||   ||||||  || |||| ||||   |||||||||| |||||||||| ||||  |||||||||    
T  6520489 tcaacatctttcaaaagtgctgaaacaatttctttatggtattctttcttaacaccatttgaagaatgccaagttacagaaacaggatcagttttcaaaa 6520390  T
Q  104 tccatgaat-accaacaacaccgacaggctctcgatcaaagcttttatacttgaaataactcaaaa 168  Q
     |||||||| |||||  ||||| ||| | |||| ||||| |||||||||||| |||| ||||||||    
T  6520389 accatgaatcaccaatgacaccaacaaggtctccatcaatgcttttatacttaaaatcactcaaaa 6520324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 234 - 278
Target Start/End: Complemental strand, 15540809 - 15540765
Alignment:
Q  234 gagatttggcaagtgaaccaaaattatcgaagtaataaataaatt 278  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  15540809 gagatttggcaagtgaaccaaaactatcgaagtaataaataaatt 15540765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 112
Target Start/End: Complemental strand, 1822200 - 1822094
Alignment:
Q  3 ttcaacgtctttcaagagagctgaaacaatttcatcattagattcttcatttacacaatttcttgaatgccaagatacagaaacatgatcgattttcaaa 102  Q
    |||||| |||||||| | ||||||||||||||||| |   |||||||  || ||||  || ||||||||||||| ||| |||||| ||||||||||||||    
T  1822200 ttcaacatctttcaaaatagctgaaacaatttcatga---gattcttgtttaacacctttgcttgaatgccaagttacggaaacaggatcgattttcaaa 1822104  T
Q  103 atccatgaat 112  Q
    | ||||||||    
T  1822103 agccatgaat 1822094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 275
Target Start/End: Complemental strand, 27649347 - 27649300
Alignment:
Q  228 atgatagagatttggcaagtgaaccaaaattatcgaagtaataaataa 275  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||    
T  27649347 atgatagagatttggcaagtgaactaaaactatcgaagtaataaataa 27649300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 229 - 284
Target Start/End: Complemental strand, 32427544 - 32427489
Alignment:
Q  229 tgatagagatttggcaagtgaaccaaaattatcgaagtaataaataaattcgtatc 284  Q
    ||||||| |||||| ||||||||||||| ||||||||||||||||||||| |||||    
T  32427544 tgatagatatttggtaagtgaaccaaaactatcgaagtaataaataaatttgtatc 32427489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 81 - 211
Target Start/End: Original strand, 6528532 - 6528667
Alignment:
Q  81 agaaacatgatcgattttcaaaatccatgaat-accaacaacaccgacaggctctcgatcaaagcttttatacttgaaataactcaaaacactaa----a 175  Q
    ||||||||||||  ||||||||||||| |||| | ||||||  || ||| | || | ||||| ||||||||||||||||| |||||||||| |||         
T  6528532 agaaacatgatcagttttcaaaatccacgaatcagcaacaatgccaacaagatcgccatcaatgcttttatacttgaaatcactcaaaacagtaatattc 6528631  T
Q  176 ttacaatctttcttagacaaaagatgaagatgaaga 211  Q
    ||||||||||||| ||| ||||| ||||||||||||    
T  6528632 ttacaatctttctcagataaaagctgaagatgaaga 6528667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 207
Target Start/End: Original strand, 6526733 - 6526810
Alignment:
Q  131 ctctcgatcaaagcttttatacttgaaataactcaaaacactaa-attacaatctttcttagacaaaagatgaagatg 207  Q
    ||||| ||||| || ||||||||| |||| |||||||||| ||| |||||||||||||||||||||||| || |||||    
T  6526733 ctctccatcaatgcgtttatacttaaaatcactcaaaacagtaacattacaatctttcttagacaaaagctgcagatg 6526810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 323
Target Start/End: Complemental strand, 1838628 - 1838599
Alignment:
Q  294 tttatcaaaaaggatgtataaatttatatt 323  Q
    ||||||||||||||||||||||||||||||    
T  1838628 tttatcaaaaaggatgtataaatttatatt 1838599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 159
Target Start/End: Original strand, 6505830 - 6505895
Alignment:
Q  95 ttttcaaaatccatgaat-accaacaacaccgacaggctctcgatcaaagcttttatacttgaaat 159  Q
    |||||||||||||||||| |||||||||||| ||| | || | ||||| |||| ||||||||||||    
T  6505830 ttttcaaaatccatgaatcaccaacaacaccaacaaggtcaccatcaatgcttgtatacttgaaat 6505895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 323
Target Start/End: Complemental strand, 14790771 - 14790742
Alignment:
Q  294 tttatcaaaaaggatgtataaatttatatt 323  Q
    ||||||||||||||||||||||||||||||    
T  14790771 tttatcaaaaaggatgtataaatttatatt 14790742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 323
Target Start/End: Complemental strand, 14795799 - 14795770
Alignment:
Q  294 tttatcaaaaaggatgtataaatttatatt 323  Q
    ||||||||||||||||||||||||||||||    
T  14795799 tttatcaaaaaggatgtataaatttatatt 14795770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 6526688 - 6526732
Alignment:
Q  64 cttgaatgccaagatacagaaacatgatcgattttcaaaatccat 108  Q
    ||||||||||||| |||||||||| ||||  ||||||||||||||    
T  6526688 cttgaatgccaagttacagaaacaagatctgttttcaaaatccat 6526732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 228 - 287
Target Start/End: Original strand, 14616428 - 14616487
Alignment:
Q  228 atgatagagatttggcaagtgaaccaaaattatcgaagtaataaataaattcgtatccac 287  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  14616428 atgatagagatttggcaagtgaaccaaaactatcgaagtaataaataaattcgtatccac 14616487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 225 - 283
Target Start/End: Original strand, 7649938 - 7649996
Alignment:
Q  225 ctaatgatagagatttggcaagtgaaccaaaattatcgaagtaataaataaattcgtat 283  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  7649938 ctaatgatagagatttgacaagtgaaccaaaactatcgaagtaataaataaattcgtat 7649996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 323
Target Start/End: Original strand, 7650034 - 7650063
Alignment:
Q  294 tttatcaaaaaggatgtataaatttatatt 323  Q
    ||||||||||||||||||||||||||||||    
T  7650034 tttatcaaaaaggatgtataaatttatatt 7650063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 323
Target Start/End: Complemental strand, 34406001 - 34405972
Alignment:
Q  294 tttatcaaaaaggatgtataaatttatatt 323  Q
    ||||||||||||||||||||||||||||||    
T  34406001 tttatcaaaaaggatgtataaatttatatt 34405972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 229 - 287
Target Start/End: Original strand, 23673345 - 23673403
Alignment:
Q  229 tgatagagatttggcaagtgaaccaaaattatcgaagtaataaataaattcgtatccac 287  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  23673345 tgatagagatttggcaagtgaaccaaaactatcgaagtaataaataaattcgtatccac 23673403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 228 - 287
Target Start/End: Complemental strand, 36327172 - 36327113
Alignment:
Q  228 atgatagagatttggcaagtgaaccaaaattatcgaagtaataaataaattcgtatccac 287  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  36327172 atgatagatatttggcaagtgaaccaaaactatcgaagtaataaataaattcgtatccac 36327113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 227 - 275
Target Start/End: Complemental strand, 16295145 - 16295097
Alignment:
Q  227 aatgatagagatttggcaagtgaaccaaaattatcgaagtaataaataa 275  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  16295145 aatgatagagatttggcaagtgaaccaaaactatcgaagtaataaataa 16295097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 229 - 287
Target Start/End: Original strand, 32575685 - 32575743
Alignment:
Q  229 tgatagagatttggcaagtgaaccaaaattatcgaagtaataaataaattcgtatccac 287  Q
    ||||||| |||||||||||||||||| | ||| ||||||||||||||||||||||||||    
T  32575685 tgatagatatttggcaagtgaaccaacactattgaagtaataaataaattcgtatccac 32575743  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 229 - 283
Target Start/End: Original strand, 24384925 - 24384981
Alignment:
Q  229 tgatagagatttggcaagtgaaccaaaattatcgaagtaataaa--taaattcgtat 283  Q
    ||||||| |||||||||||| ||||||| |||||||||||||||  |||||||||||    
T  24384925 tgatagatatttggcaagtgtaccaaaactatcgaagtaataaaattaaattcgtat 24384981  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 287
Target Start/End: Original strand, 32074156 - 32074216
Alignment:
Q  229 tgatagagatttggcaagtgaaccaaaattatcgaagtaata--aataaattcgtatccac 287  Q
    ||||||| ||||| |||||  |||||||||||||||||||||  |||||||| ||||||||    
T  32074156 tgatagatatttgacaagtataccaaaattatcgaagtaataataataaatttgtatccac 32074216  T

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Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 229 - 287
Target Start/End: Complemental strand, 13496232 - 13496174
Alignment:
Q  229 tgatagagatttggcaagtgaaccaaaattatcgaagtaataaataaattcgtatccac 287  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  13496232 tgatagagatttgacaagtgaaccaaaactatcgaagtaataaataaattcgtatccac 13496174  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 229 - 284
Target Start/End: Complemental strand, 39546486 - 39546431
Alignment:
Q  229 tgatagagatttggcaagtgaaccaaaattatcgaagtaataaataaattcgtatc 284  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||  |||||||    
T  39546486 tgatagagatttggcaagtgaaccaaaattattgaagtaataaataagatcgtatc 39546431  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 229 - 287
Target Start/End: Original strand, 16190179 - 16190237
Alignment:
Q  229 tgatagagatttggcaagtgaaccaaaattatcgaagtaataaataaattcgtatccac 287  Q
    |||| |||||||| |||||||| ||||| ||||||||||||||||||||||||||||||    
T  16190179 tgatggagatttgacaagtgaatcaaaactatcgaagtaataaataaattcgtatccac 16190237  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 229 - 287
Target Start/End: Original strand, 32505857 - 32505915
Alignment:
Q  229 tgatagagatttggcaagtgaaccaaaattatcgaagtaataaataaattcgtatccac 287  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||||  ||||||||||    
T  32505857 tgatagatatttggcaagtgaaccaaaactatcgaagtaataaataagatcgtatccac 32505915  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 323
Target Start/End: Complemental strand, 10765072 - 10765043
Alignment:
Q  294 tttatcaaaaaggatgtataaatttatatt 323  Q
    ||||||||||||||||||||||||||||||    
T  10765072 tttatcaaaaaggatgtataaatttatatt 10765043  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 323
Target Start/End: Complemental strand, 13493415 - 13493386
Alignment:
Q  294 tttatcaaaaaggatgtataaatttatatt 323  Q
    ||||||||||||||||||||||||||||||    
T  13493415 tttatcaaaaaggatgtataaatttatatt 13493386  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 323
Target Start/End: Complemental strand, 13496140 - 13496111
Alignment:
Q  294 tttatcaaaaaggatgtataaatttatatt 323  Q
    ||||||||||||||||||||||||||||||    
T  13496140 tttatcaaaaaggatgtataaatttatatt 13496111  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 323
Target Start/End: Original strand, 32505953 - 32505982
Alignment:
Q  294 tttatcaaaaaggatgtataaatttatatt 323  Q
    ||||||||||||||||||||||||||||||    
T  32505953 tttatcaaaaaggatgtataaatttatatt 32505982  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 211
Target Start/End: Complemental strand, 35231251 - 35231149
Alignment:
Q  113 accaacaacaccgacaggctctcgatcaaagcttttatacttgaaataactcaaaacactaa----attacaatctttcttagacaaaagatgaagatga 208  Q
    |||||||||||| ||| | || | ||||| |||||||||||| |||| | |||||||| |||    ||||||||| |||| ||| ||||| |||||||||    
T  35231251 accaacaacaccaacaagttcactatcaatgcttttatacttaaaatcattcaaaacagtaacattattacaatcattctcagataaaagctgaagatga 35231152  T
Q  209 aga 211  Q
    |||    
T  35231151 aga 35231149  T

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Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 229 - 289
Target Start/End: Original strand, 36842937 - 36842997
Alignment:
Q  229 tgatagagatttggcaagtgaaccaaaattatcgaagtaataaataaattcgtatccacaa 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||    
T  36842937 tgatagagatttggcaagtgaaccaaaattatcgaagtaataaataagatcgaatccacaa 36842997  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 229 - 287
Target Start/End: Complemental strand, 24783654 - 24783596
Alignment:
Q  229 tgatagagatttggcaagtgaaccaaaattatcgaagtaataaataaattcgtatccac 287  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||    
T  24783654 tgatagagatttgacaagtgaaccaaaactatcgaagtaataaataaatttgtatccac 24783596  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 275
Target Start/End: Complemental strand, 9766046 - 9766000
Alignment:
Q  229 tgatagagatttggcaagtgaaccaaaattatcgaagtaataaataa 275  Q
    ||||||| ||||||||||| |||||||| ||||||||||||||||||    
T  9766046 tgatagatatttggcaagttaaccaaaactatcgaagtaataaataa 9766000  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 323
Target Start/End: Complemental strand, 6967300 - 6967271
Alignment:
Q  294 tttatcaaaaaggatgtataaatttatatt 323  Q
    ||||||||||||||||||||||||||||||    
T  6967300 tttatcaaaaaggatgtataaatttatatt 6967271  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 323
Target Start/End: Original strand, 17866446 - 17866475
Alignment:
Q  294 tttatcaaaaaggatgtataaatttatatt 323  Q
    ||||||||||||||||||||||||||||||    
T  17866446 tttatcaaaaaggatgtataaatttatatt 17866475  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 323
Target Start/End: Complemental strand, 24783561 - 24783532
Alignment:
Q  294 tttatcaaaaaggatgtataaatttatatt 323  Q
    ||||||||||||||||||||||||||||||    
T  24783561 tttatcaaaaaggatgtataaatttatatt 24783532  T

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Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 229 - 287
Target Start/End: Original strand, 26062690 - 26062748
Alignment:
Q  229 tgatagagatttggcaagtgaaccaaaattatcgaagtaataaataaattcgtatccac 287  Q
    ||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  26062690 tgataaagatttggcaagtgaaccaaaactatcgaaataataaataaattcgtatccac 26062748  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 287
Target Start/End: Complemental strand, 15851539 - 15851479
Alignment:
Q  227 aatgatagagatttggcaagtgaaccaaaattatcgaagtaataaataaattcgtatccac 287  Q
    ||||||| |||||||||||||| ||||||| |||||||||||||   || |||||||||||    
T  15851539 aatgataaagatttggcaagtgtaccaaaactatcgaagtaatagtaaagttcgtatccac 15851479  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 323
Target Start/End: Original strand, 647296 - 647325
Alignment:
Q  294 tttatcaaaaaggatgtataaatttatatt 323  Q
    ||||||||||||||||||||||||||||||    
T  647296 tttatcaaaaaggatgtataaatttatatt 647325  T

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Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 229 - 287
Target Start/End: Complemental strand, 13979730 - 13979672
Alignment:
Q  229 tgatagagatttggcaagtgaaccaaaattatcgaagtaataaataaattcgtatccac 287  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||    
T  13979730 tgatagagatttggcaagtgaaccaaaactatcgaagtaataaataaaatcgaatccac 13979672  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 229 - 287
Target Start/End: Complemental strand, 46731699 - 46731641
Alignment:
Q  229 tgatagagatttggcaagtgaaccaaaattatcgaagtaataaataaattcgtatccac 287  Q
    ||||||||||||||||||||||| |||| |||||||||||| |||||||| ||||||||    
T  46731699 tgatagagatttggcaagtgaacaaaaactatcgaagtaatgaataaatttgtatccac 46731641  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 289
Target Start/End: Original strand, 26822039 - 26822099
Alignment:
Q  229 tgatagagatttggcaagtgaaccaaaattatcgaagtaataaataaattcgtatccacaa 289  Q
    |||||||  ||||| ||||| ||||||| ||||||||||||||  ||||||||||||||||    
T  26822039 tgatagacttttggaaagtgtaccaaaactatcgaagtaataataaaattcgtatccacaa 26822099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 287
Target Start/End: Complemental strand, 3306213 - 3306153
Alignment:
Q  229 tgatagagatttggcaagtgaaccaa-aattatcgaagtaataaa-taaattcgtatccac 287  Q
    ||||||| |||||||||||| ||||| || ||||||||||||||| ||| |||||||||||    
T  3306213 tgatagatatttggcaagtgtaccaataactatcgaagtaataaattaagttcgtatccac 3306153  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 287
Target Start/End: Original strand, 30157797 - 30157857
Alignment:
Q  229 tgatagagatttggcaagtgaaccaa-aattatcgaagtaataaa-taaattcgtatccac 287  Q
    ||||||| |||||||||||| ||||| || ||||||||||||||| ||| |||||||||||    
T  30157797 tgatagaaatttggcaagtgtaccaataactatcgaagtaataaattaagttcgtatccac 30157857  T

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Target: scaffold0352 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 229 - 287
Target Start/End: Original strand, 2619 - 2677
Alignment:
Q  229 tgatagagatttggcaagtgaaccaaaattatcgaagtaataaataaattcgtatccac 287  Q
    |||| ||||||||||||||| ||||||| ||||||||||||||||||  ||||||||||    
T  2619 tgatggagatttggcaagtggaccaaaactatcgaagtaataaataagatcgtatccac 2677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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