View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19496_low_9 (Length: 250)

Name: NF19496_low_9
Description: NF19496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19496_low_9
NF19496_low_9
[»] chr1 (3 HSPs)
chr1 (13-250)||(7623187-7623424)
chr1 (34-248)||(7636300-7636514)
chr1 (34-248)||(7629517-7629731)


Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 7623187 - 7623424
Alignment:
Q  13 aatatatcgatgatatctgcaacttcttgttccttggttgtaggctttgttgaattatccatgtggtcatcaatgacttgttggtatatcaaatccaact 112  Q
    |||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7623187 aatatatcaatgatatctgcaacttcttgctccttggttttaggctttgttgaattatccatgtggtcatcaatgacttgttggtatatcaaatccaact 7623286  T
Q  113 ccttgaactttttatcaagcctcccaagagttcctttgattctatcaacccaacctaataatggaaaatgatcagaaaagtaaaactcagttaacaaagc 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  7623287 ccttgaactttttatcaagcctcccaagagttcctttgattctatcaacccaacctaacaatggaaaatgatcagaaaagtaaaactcagttaacaaagc 7623386  T
Q  213 ctgtgcttcattaagcaaaacttgcaatctacttcttc 250  Q
    ||||||||||||||||||||||||||||||||||||||    
T  7623387 ctgtgcttcattaagcaaaacttgcaatctacttcttc 7623424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 34 - 248
Target Start/End: Original strand, 7636300 - 7636514
Alignment:
Q  34 acttcttgttccttggttgtaggctttgttgaattatccatgtggtcatcaatgacttgttggtatatcaaatccaactccttgaactttttatcaagcc 133  Q
    |||||||||||||| ||| ||||| ||| |||||||||||||||||||||||| |||  |||||||||||||||||||||||||||  ||||||||||||    
T  7636300 acttcttgttccttagttttaggccttgctgaattatccatgtggtcatcaataactctttggtatatcaaatccaactccttgaatgttttatcaagcc 7636399  T
Q  134 tcccaagagttcctttgattctatcaacccaacctaataatggaaaatgatcagaaaagtaaaactcagttaacaaagcctgtgcttcattaagcaaaac 233  Q
    |||||||||||||||||| |||||||| |||||| || |||||||||| ||| ||||||||||| ||||  |||||||| || |||||||||||||||||    
T  7636400 tcccaagagttcctttgactctatcaatccaacccaacaatggaaaattatctgaaaagtaaaattcagccaacaaagcttgagcttcattaagcaaaac 7636499  T
Q  234 ttgcaatctacttct 248  Q
    |||||||||||||||    
T  7636500 ttgcaatctacttct 7636514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 34 - 248
Target Start/End: Original strand, 7629517 - 7629731
Alignment:
Q  34 acttcttgttccttggttgtaggctttgttgaattatccatgtggtcatcaatgacttgttggtatatcaaatccaactccttgaactttttatcaagcc 133  Q
    |||||||||||||| ||| ||||| ||| ||||| |||||||||||||||||| |||  |||||||||||||||||||||||||||| ||||||||||||    
T  7629517 acttcttgttccttagttttaggccttgctgaataatccatgtggtcatcaataactctttggtatatcaaatccaactccttgaacgttttatcaagcc 7629616  T
Q  134 tcccaagagttcctttgattctatcaacccaacctaataatggaaaatgatcagaaaagtaaaactcagttaacaaagcctgtgcttcattaagcaaaac 233  Q
    ||||||| |||||||||| |||||||| |||||| || |||||||||| ||| ||||||||||| ||||  |||||||| || |||||||||||||||||    
T  7629617 tcccaagtgttcctttgactctatcaatccaaccaaacaatggaaaattatctgaaaagtaaaattcagccaacaaagcttgagcttcattaagcaaaac 7629716  T
Q  234 ttgcaatctacttct 248  Q
    |||||||||||||||    
T  7629717 ttgcaatctacttct 7629731  T

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