View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19497_high_2 (Length: 415)
Name: NF19497_high_2
Description: NF19497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19497_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 185 - 396
Target Start/End: Original strand, 31913014 - 31913225
Alignment:
| Q |
185 |
gcgtttgtcatcattatctgctggtggtcctgggaaattaattttacagtatcaaacaacactataactcctgcactgttaaatatcagtatttggagag |
284 |
Q |
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| T |
31913014 |
gcgtttgtcatcattatctgctggtggtcctgggaaattaattttacagtatcaaacaacactataactcctgcactgttaaatatcagtatttggagag |
31913113 |
T |
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| Q |
285 |
attccaaatgtgaggtgattgtgaagcctggatggtgatatgtgacgagagagctatgaaagtattgtgattgataatgagagatgaagggatggggttg |
384 |
Q |
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| T |
31913114 |
attccaaatgtgaggtgattgtgaaacctggatggtgatatgtgacgagagagctatgaaagtattgtgattgataatgagagatgaagggatggggttg |
31913213 |
T |
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| Q |
385 |
tcatgtcttggg |
396 |
Q |
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| T |
31913214 |
tcatgtcttggg |
31913225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 11 - 153
Target Start/End: Original strand, 31912863 - 31913005
Alignment:
| Q |
11 |
agaatatgatgaaattaaagctatgcttgtatatggtttgcatacagtactacgtagcatgcatgcatccaacagggtgtaaatgaaaagctaaagaaaa |
110 |
Q |
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| T |
31912863 |
agaaaatgatgaaattaaagctatgcttgtatatggtttgcatacagtactacgtagcatgcatgcatccaacagggtgtaaatgaaaagctaaagaaaa |
31912962 |
T |
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| Q |
111 |
taaaagaaggagatcactgctgtctacagaagctacagtacaa |
153 |
Q |
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| T |
31912963 |
taaaagaaggatatcactgctgtctacagaagctacagtacaa |
31913005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 16 - 170
Target Start/End: Original strand, 31917095 - 31917249
Alignment:
| Q |
16 |
atgatgaaattaaagctatgcttgtatatggtttgcatacagtactacgtagcatgcatgcatccaacagggtgtaaatgaaaagctaaagaaaataaaa |
115 |
Q |
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| T |
31917095 |
atgatgaaattaaagctattcctaaatatggtttgtatacagtactacgtagcattcatgcatccaacagggtgtaaatgaaaagctaaagaaaataaaa |
31917194 |
T |
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| Q |
116 |
gaaggagatcactgctgtctacagaagctacagtacaaggtgaaaattatgttac |
170 |
Q |
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| T |
31917195 |
gaaggagatcattgctgtctacagaagctacagtaaaaggtgaaaactatgttac |
31917249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 16 - 154
Target Start/End: Original strand, 31973022 - 31973160
Alignment:
| Q |
16 |
atgatgaaattaaagctatgcttgtatatggtttgcatacagtactacgtagcatgcatgcatccaacagggtgtaaatgaaaagctaaagaaaataaaa |
115 |
Q |
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| T |
31973022 |
atgatgaaattaaagctatgcctaaatatggtttgtatacagtactacgtagcattcatgcatccaacagggtgtaaatgaaaagctaaagaaaataaaa |
31973121 |
T |
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| Q |
116 |
gaaggagatcactgctgtctacagaagctacagtacaag |
154 |
Q |
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| T |
31973122 |
gaaggatatcactgctgtctacagaagctacagtacaag |
31973160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 200 - 260
Target Start/End: Original strand, 31973211 - 31973273
Alignment:
| Q |
200 |
atctgctggtggtcctgggaaattaatttt--acagtatcaaacaacactataactcctgcac |
260 |
Q |
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| T |
31973211 |
atctgctggtggtactgggaaattaattttttacagtatcaaacaacactatcactcctgcac |
31973273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 260
Target Start/End: Original strand, 31976996 - 31977058
Alignment:
| Q |
198 |
ttatctgctggtggtcctgggaaattaattttacagtatcaaacaacactataactcctgcac |
260 |
Q |
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| T |
31976996 |
ttatctgatggtggtacatggaaattaattttacactgtcaaacaacactatcacacctgcac |
31977058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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