View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19497_low_3 (Length: 375)
Name: NF19497_low_3
Description: NF19497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19497_low_3 |
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| [»] chr8 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-171; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 28 - 375
Target Start/End: Complemental strand, 1242011 - 1241666
Alignment:
| Q |
28 |
ttattttattttattttcatataatataatgtgcaggagtataacttagatccatccataaaagccgatgattctaccaaagaaaacctggacaaacttg |
127 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| || ||||||| ||||||||||||||||||||||||||| |
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| T |
1242011 |
ttattttattttattttgatataatataatgtgcaggagtataatttagatccatccataggaggcgatgatactaccaaagaaaacctggacaaacttg |
1241912 |
T |
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| Q |
128 |
taaaggcaggagaggacttactggaagaaactgttaaggtcatggatgttacttcttttctcccatacgaaaaaccaactgagggtacaaatgctcaggc |
227 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
1241911 |
taaaggcaggagaggacttattggaagaaactgttaaggtcatggatgttacttcttttgtcccatacgaaaaaccaactgagggtacaaatgctcaggc |
1241812 |
T |
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| Q |
228 |
tcttgaaaggtctgtgcaatttacttaccataatttttagattgatgtgatacaccatgctaaaggattaaaccatatagtaaattaaattgttttattc |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1241811 |
tcttgaaaggtctgtgcaatttacttaccataatttttagattgatgtgatacaccatgctaaaggattaaaccatatagtaaattaaattgttttattc |
1241712 |
T |
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| Q |
328 |
catttctatatagtaatgtcatgatgaccttcattgtttattgttgta |
375 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
1241711 |
catttc--tatagtaatgtcatgatgaccttcattgtttattgttgta |
1241666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 28 - 375
Target Start/End: Complemental strand, 1252724 - 1252379
Alignment:
| Q |
28 |
ttattttattttattttcatataatataatgtgcaggagtataacttagatccatccataaaagccgatgattctaccaaagaaaacctggacaaacttg |
127 |
Q |
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| T |
1252724 |
ttattttattttattttgatataatataatgtgcaggagtataatttagatccatccataggaggcgatgatactaccaaagaaaacctggacaaacttg |
1252625 |
T |
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| Q |
128 |
taaaggcaggagaggacttactggaagaaactgttaaggtcatggatgttacttcttttctcccatacgaaaaaccaactgagggtacaaatgctcaggc |
227 |
Q |
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| T |
1252624 |
taaaggcaggagatgacttactggaagaaactgttaaggtcatggatgttacttcttttgtcccatacgaaaaaccaactgagggtacaaatgctcaggc |
1252525 |
T |
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| Q |
228 |
tcttgaaaggtctgtgcaatttacttaccataatttttagattgatgtgatacaccatgctaaaggattaaaccatatagtaaattaaattgttttattc |
327 |
Q |
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| T |
1252524 |
tcttgaaaggtctgtgcaatttacttaccataatttttagattgatgtgatacaccatgctaaaggattaaaccatatagtaaattaaattgttttattc |
1252425 |
T |
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| Q |
328 |
catttctatatagtaatgtcatgatgaccttcattgtttattgttgta |
375 |
Q |
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| T |
1252424 |
catttc--tatagtaatgtcatgatgaccttcattgtttattgttgta |
1252379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 53 - 250
Target Start/End: Complemental strand, 1220362 - 1220165
Alignment:
| Q |
53 |
ataatgtgcaggagtataacttagatccatccataaaagccgatgattctaccaaagaaaacctggacaaacttgtaaaggcaggagaggacttactgga |
152 |
Q |
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| T |
1220362 |
ataatgtgcaggagtataacttggacccgtccatgggcgctgataatgttaccatagaaagcatggaaaatctgatacaggcaggaaaggacttacttga |
1220263 |
T |
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| Q |
153 |
agaaactgttaaggtcatggatgttacttcttttctcccatacgaaaaaccaactgagggtacaaatgctcaggctcttgaaaggtctgtgcaattta |
250 |
Q |
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| T |
1220262 |
acaaaatgttaaggtcatagatataaattcctttctcccactcgaaaaaccaagtgagggtacaaatgctgaggctcttgaaaggtttgtgcacttta |
1220165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 146
Target Start/End: Complemental strand, 1195881 - 1195836
Alignment:
| Q |
101 |
ctaccaaagaaaacctggacaaacttgtaaaggcaggagaggactt |
146 |
Q |
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| T |
1195881 |
ctaccatagaaaacatggaaaaacttataaaggcaggagaggactt |
1195836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 44
Target Start/End: Complemental strand, 1242028 - 1242000
Alignment:
| Q |
16 |
tctttatggtgattattttattttatttt |
44 |
Q |
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| T |
1242028 |
tctttatggtgattattttattttatttt |
1242000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 44
Target Start/End: Complemental strand, 1252741 - 1252713
Alignment:
| Q |
16 |
tctttatggtgattattttattttatttt |
44 |
Q |
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| T |
1252741 |
tctttatggtgattattttattttatttt |
1252713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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