View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19497_low_6 (Length: 288)
Name: NF19497_low_6
Description: NF19497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19497_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 19 - 275
Target Start/End: Complemental strand, 28404065 - 28403809
Alignment:
| Q |
19 |
agaatcaccaatctttttccaatttttccactcagaatcgtctttatatatgtcatgcctgtgtgtgaacaacgattctgctttctcatgaacaagaaat |
118 |
Q |
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| T |
28404065 |
agaatcacctatctttttccaatttttccactcagaatcgtctttatatatgtcatgcctgtgtgtgaacaatgattctgctttctcatgaacaagaaat |
28403966 |
T |
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| Q |
119 |
tgcaaagatgtttctgtaacaactgctcttacttctgcccattctgaaaaagcattaaaaacaagtccaaatttcatagcagctacacttccacaacaac |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28403965 |
tgcaaagatgtttctgtaacaactgctcttacttctgcccattctgaaaaagcattaaaaacaagtccaaatttcatagcagctacacttccacaacaac |
28403866 |
T |
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| Q |
219 |
caagtagaattcgaggcttcctcggagcattaacatgtccaatttcactttttgagt |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
28403865 |
caagtagaattcgaggcttcctcggagcattaacatgtccaattgcactttttgagt |
28403809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 19 - 275
Target Start/End: Original strand, 28585731 - 28585987
Alignment:
| Q |
19 |
agaatcaccaatctttttccaatttttccactcagaatcgtctttatatatgtcatgcctgtgtgtgaacaacgattctgctttctcatgaacaagaaat |
118 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
28585731 |
agaatcacctatctttttccaatttttccactcagaatcgtctttatatatgtcatgcctgtgtgtgaacaatgattctgctttctcatgaacaagaaat |
28585830 |
T |
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| Q |
119 |
tgcaaagatgtttctgtaacaactgctcttacttctgcccattctgaaaaagcattaaaaacaagtccaaatttcatagcagctacacttccacaacaac |
218 |
Q |
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| T |
28585831 |
tgcaaagatgtttctgtaacaactgctcttacttctgcccattctgaaaaagcattaaaaacaagtccaaatttcatagcagctacacttccacaacaac |
28585930 |
T |
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| Q |
219 |
caagtagaattcgaggcttcctcggagcattaacatgtccaatttcactttttgagt |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
28585931 |
caagtagaattcgaggcttcctcggagcattaacatgtccaattgcactttttgagt |
28585987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 92 - 241
Target Start/End: Complemental strand, 28417549 - 28417400
Alignment:
| Q |
92 |
gattctgctttctcatgaacaagaaattgcaaagatgtttctgtaacaactgctcttacttctgcccattctgaaaaagcattaaaaacaagtccaaatt |
191 |
Q |
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|||||||||||||||| | |||||||||| |||| ||||| ||| ||||| ||| ||||||||||||||||||| |||||| || |||||||||||||| |
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| T |
28417549 |
gattctgctttctcattagcaagaaattgtaaagctgtttttgtgacaacagcttttacttctgcccattctgataaagcacgaagaacaagtccaaatt |
28417450 |
T |
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| Q |
192 |
tcatagcagctacacttccacaacaaccaagtagaattcgaggcttcctc |
241 |
Q |
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|||| |||||||||||||||||| |||||||| ||| |||||||||||| |
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| T |
28417449 |
tcatggcagctacacttccacaagcaccaagtacaatccgaggcttcctc |
28417400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 241
Target Start/End: Complemental strand, 28419944 - 28419851
Alignment:
| Q |
148 |
tacttctgcccattctgaaaaagcattaaaaacaagtccaaatttcatagcagctacacttccacaacaaccaagtagaattcgaggcttcctc |
241 |
Q |
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||||||||||||||| ||||||| || ||| ||||| ||||||||||||||||||||||||||| ||||| | ||| |||||||||||| |
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| T |
28419944 |
tacttctgcccattccataaaagcacgaagaacgagtccgaatttcatagcagctacacttccacaagcaccaatcacaatccgaggcttcctc |
28419851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 241
Target Start/End: Original strand, 28582246 - 28582339
Alignment:
| Q |
148 |
tacttctgcccattctgaaaaagcattaaaaacaagtccaaatttcatagcagctacacttccacaacaaccaagtagaattcgaggcttcctc |
241 |
Q |
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||||||||||||||| ||||||| || ||| ||||| ||||||||||||||||||||||||||| ||||| | ||| |||||||||||| |
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| T |
28582246 |
tacttctgcccattccataaaagcacgaagaacgagtccgaatttcatagcagctacacttccacaagcaccaatcacaatccgaggcttcctc |
28582339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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