View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19498_high_1_N (Length: 308)
Name: NF19498_high_1_N
Description: NF19498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19498_high_1_N |
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| [»] chr2 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 2 - 308
Target Start/End: Original strand, 21345828 - 21346134
Alignment:
| Q |
2 |
atcaattccaccacatgaatcataaagtataacagaaaagcagtccatatgcaatcaacttccagcgtattctcggtaaaattcttgacgtatcattcat |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
21345828 |
atcaattccaccacatgaatcataaagtataacagaaaagcagtccatatgcaatcaacttccagcgtattctcggtaaaattcttgacgcatcattcat |
21345927 |
T |
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| Q |
102 |
ggattttaataaaatggttcatactcgcgttagggcttgtttgtttcttttgtatcaacatgtctccaagggttgagagcttctctaattgcttgagctt |
201 |
Q |
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| T |
21345928 |
ggattttaataaaatggttcatactcgcgttagggcttgtttgtttcttttgtatcaacatgtctccaagggttgagagcttctctaattgcttgagcat |
21346027 |
T |
|
| Q |
202 |
ctggagaattctccaaggcgcgcttttctgactccaaaacagttactttgtcatctgcacaatgcaaaaaagtgaaacagattcaaactttctaaaccta |
301 |
Q |
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| T |
21346028 |
ctggagaattctccaaggcgcgcttttctgactccaaaacagttactttgtcatctgcacaatgcaaaaaagtgaaacagattcaaactttctaaaccta |
21346127 |
T |
|
| Q |
302 |
aatcctt |
308 |
Q |
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||||||| |
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| T |
21346128 |
aatcctt |
21346134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 2 - 308
Target Start/End: Original strand, 22559 - 22864
Alignment:
| Q |
2 |
atcaattccaccacatgaatcataaagtataacagaaaagcagtccatatgcaatcaacttccagcgtattctcggtaaaattcttgacgtatcattcat |
101 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
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| T |
22559 |
atcaattccaccacatgaatcataa-gtataacagaaaagcagtccatatgcaatcaacttccagcgtattctctgtaaaattcttgacgaatcattcat |
22657 |
T |
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| Q |
102 |
ggattttaataaaatggttcatactcgcgttagggcttgtttgtttcttttgtatcaacatgtctccaagggttgagagcttctctaattgcttgagctt |
201 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22658 |
ggattttaataaaatggttcatactcgcgtcagggcttgtttgtttcttttgtatcaacatgtctccaagggttgagagcttctctaattgcttgagctt |
22757 |
T |
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| Q |
202 |
ctggagaattctccaaggcgcgcttttctgactccaaaacagttactttgtcatctgcacaatgcaaaaaagtgaaacagattcaaactttctaaaccta |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22758 |
ctggagaattctccaaggcgcgcttttctgactccaaaacagttactttgtcatctgcacaatgcaaaaaagtgaaacagattcaaactttctaaaccta |
22857 |
T |
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| Q |
302 |
aatcctt |
308 |
Q |
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||||||| |
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| T |
22858 |
aatcctt |
22864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 5 - 308
Target Start/End: Original strand, 29380906 - 29381208
Alignment:
| Q |
5 |
aattccaccacatgaatcataaagtataacagaaaagcagtccatatgcaatcaacttccagcgtattctcggtaaaattcttgacgtatcattcatgga |
104 |
Q |
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||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
29380906 |
aattccatgacatgaatcataa-gtataacagaaaagcagtccatatgcaatcgacttccagcgtattctcggtaaaattcttgacaaatcattcatgga |
29381004 |
T |
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| Q |
105 |
ttttaataaaatggttcatactcgcgttagggcttgtttgtttcttttgtatcaacatgtctccaagggttgagagcttctctaattgcttgagcttctg |
204 |
Q |
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|||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29381005 |
ttttaataaaatggctcatactcacgtcagggcttgtttgtttcttttgtatcaacatgtctccaagggttgagagcttctctaattgcttgagcttctg |
29381104 |
T |
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| Q |
205 |
gagaattctccaaggcgcgcttttctgactccaaaacagttactttgtcatctgcacaatgcaaaaaagtgaaacagattcaaactttctaaacctaaat |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
29381105 |
gagaattctccaaggcgcgcttttctgactccaaaacagttactttatcatctgcacaatgcaaaaaagtgaaacagattcaaactttgtaaacctaaat |
29381204 |
T |
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| Q |
305 |
cctt |
308 |
Q |
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|||| |
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| T |
29381205 |
cctt |
29381208 |
T |
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