View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19498_low_1 (Length: 419)
Name: NF19498_low_1
Description: NF19498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19498_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 16 - 405
Target Start/End: Complemental strand, 38188895 - 38188506
Alignment:
| Q |
16 |
cagtagcttggctcaaaggagaaggtttgtgttatatcttagtatcttatcattcattatagtaggcatgcatccatgtcgttcctcatacaaatttgtt |
115 |
Q |
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| T |
38188895 |
cagtagcttggctcaaaggagaaggtttgtgttatatcttagtatcttatcattcattatagtaggcatgcatccatgtcgttcctcatacaaatttgtt |
38188796 |
T |
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| Q |
116 |
ttaccttgtaggtatatcaatatggtttctttcaattatatacctcatttccggtgtaccaggagcctatgtgatgtggtatcgccctctatatcgtgct |
215 |
Q |
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| T |
38188795 |
ttaccttgtaggtatatcaatatggtttctttcaattatatacctcatttccggtgtaccaggagcctatgtgatgtggtatcgccctctatatcgtgct |
38188696 |
T |
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| Q |
216 |
acgaggtagttagtttacagtctgattgaatccaattttactggtttgtcatgttttgttctataattctatgtcatctcctgttacaggacggacagtg |
315 |
Q |
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| T |
38188695 |
acgaggtagttagtttacagtctgattgaatccaattttactggtttgtcatgttttgttctataattctatgtcatctcctgttacaggacggacagtg |
38188596 |
T |
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| Q |
316 |
ctctaaaatttggctggtttttcttatgctactcggcaagttttctatttatttttcatagaagtaaccattcattctgtgcttattttg |
405 |
Q |
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| T |
38188595 |
ctctaaaatttggctggtttttcttatgctactcggcaagttttatatttatttttcatagaagtaaccattcattctgtgcttattttg |
38188506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 138 - 224
Target Start/End: Complemental strand, 16184214 - 16184128
Alignment:
| Q |
138 |
tggtttctttcaattatatacctcatttccggtgtaccaggagcctatgtgatgtggtatcgccctctatatcgtgctacgaggtag |
224 |
Q |
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| T |
16184214 |
tggtttcttgctattatatattttatttctggtgttccagcatcctatgtgatgtggtatcgccctctttatcgcgctatgaggtag |
16184128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 337
Target Start/End: Complemental strand, 16183565 - 16183527
Alignment:
| Q |
299 |
ttacaggacggacagtgctctaaaatttggctggttttt |
337 |
Q |
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| T |
16183565 |
ttacaggacggacagtgctctgaagtttggctggttttt |
16183527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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