View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19499_high_11 (Length: 395)
Name: NF19499_high_11
Description: NF19499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19499_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 17 - 387
Target Start/End: Complemental strand, 8300042 - 8299672
Alignment:
| Q |
17 |
aattaaagatggatctatctagaaaatagtgtactgaaaatatgactaaaacaatatgaatgtgtagtgcagctccttcaagacgttaggttaggaaatt |
116 |
Q |
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| T |
8300042 |
aattaaagatggatctatctagaaaatagtgtactgaaaatatgactaaaacaatatgaatgtgtagtgcagctccttcaagacgttaggttaggaaatt |
8299943 |
T |
|
| Q |
117 |
gaatatttaattgaaaattgatttttcctatgccttgtatagatattatttgaattgtttttaggtagttatctaggattaggattgattgtactatata |
216 |
Q |
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| T |
8299942 |
gaatatttaattgaaaattgattttgcatatgccttgtatagatattatttgaatggtttttaggtagttatctaggattagaattgaatgtactatata |
8299843 |
T |
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| Q |
217 |
atatgaaaatggtaactttaatattgatactgattatgtattgttttccttccgttgtctttcatttgcaggtagatagatatagatcagcatcattgat |
316 |
Q |
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| T |
8299842 |
atatgaaaatggtaactttaatattgatactgattatgtattgttttccttccgttgtctttcatttgcaggtagatagatatagatcagcatcattgat |
8299743 |
T |
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| Q |
317 |
catgtaagtgtgtggttccttcaatagtctcacgagtgaatgctgaagatctgcactacaatcggctcatt |
387 |
Q |
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| T |
8299742 |
catgtaagtgtgtggttccttcaatagtctcacgaatgaatgctgaagatctgcactacaatcggctcatt |
8299672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 17 - 141
Target Start/End: Complemental strand, 8309548 - 8309425
Alignment:
| Q |
17 |
aattaaagatggatctatctagaaaa-tagtgtactgaaaatatgactaaaacaatatgaatgtgtagtgcagctccttcaagacgttaggttaggaaat |
115 |
Q |
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| T |
8309548 |
aattagagatggatctatatagaaaaatagtgtactgaaaatatgactaaaacaatatgaatgtgtagtgcagctccttca--gccttaggttaggaaat |
8309451 |
T |
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| Q |
116 |
tgaatatttaattgaaaattgatttt |
141 |
Q |
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| T |
8309450 |
tgaatatttaattgaaaattgatttt |
8309425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 145 - 315
Target Start/End: Complemental strand, 8309391 - 8309215
Alignment:
| Q |
145 |
tatgccttgtatagatattatttgaattgtttttaggtagttatctaggattaggattgattgtactatataatatgaaaatggtaact------ttaat |
238 |
Q |
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| T |
8309391 |
tatgtcttgtatagatattacttgaatggtttttatgtagctatctaggaccaggattgattgtactatataatatgaaaaaggtaactttgttattaat |
8309292 |
T |
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| Q |
239 |
attgatactgattatgtattgttttccttccgttgtctttcatttgcaggtagatagatatagatcagcatcattga |
315 |
Q |
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||| ||| ||||||| |||| ||| |||||||| ||||||||||||||| ||||||||||| || ||||||||||| |
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| T |
8309291 |
attcatattgattatatattaatttgcttccgttttctttcatttgcaggaagatagatataaattagcatcattga |
8309215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 163 - 272
Target Start/End: Original strand, 21120775 - 21120882
Alignment:
| Q |
163 |
tatttgaattgtttttaggtagttatctaggattaggattgattgtactatataatatgaaaatggtaactttaatattgatactgattatgtattgttt |
262 |
Q |
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|||||||| ||||||| | || ||||||| ||||||||||||| ||||||| ||||||||||||||||||| |||| ||| ||||| ||||||| || |
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| T |
21120775 |
tatttgaagggtttttatgcagctatctagaattaggattgattctactata--atatgaaaatggtaactttgttattaatattgattttgtattgatt |
21120872 |
T |
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| Q |
263 |
tccttccgtt |
272 |
Q |
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||||| |||| |
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| T |
21120873 |
tcctttcgtt |
21120882 |
T |
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