View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19499_high_13 (Length: 376)
Name: NF19499_high_13
Description: NF19499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19499_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 99; Significance: 9e-49; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 5 - 204
Target Start/End: Complemental strand, 35568833 - 35568619
Alignment:
| Q |
5 |
gtagattattctcgaatgatattatagtctcctctaagatttattgaaccaccttgtatcgtatttttgc----------------atttatatgcacgc |
88 |
Q |
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| T |
35568833 |
gtagattcttctcgaatgatattatagtctcctctaagatttattgaaccaccttgtatcatattttcgctgttggattacacatcatttatatgcacac |
35568734 |
T |
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| Q |
89 |
actaagtttaatatagttggacatgagagtgtgtgttaaaaagactttcactttaaatgatagctgaccgtaaacaattataagtggatacaattttcaa |
188 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||| || || |||| |||||||||| |
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| T |
35568733 |
actaagtttaatatagttggacacgagagtgtgtgttaaaaagacttccactttaaatgatagctga-cgtaaacaacaatgagcggatgcaattttcaa |
35568635 |
T |
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| Q |
189 |
ctcttacgccgatttt |
204 |
Q |
| |
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||| || |||||||| |
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| T |
35568634 |
ctcctataccgatttt |
35568619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 205 - 359
Target Start/End: Complemental strand, 35568552 - 35568399
Alignment:
| Q |
205 |
caagaaaagcacattttcatgttagttattcctatcannnnnnnngggtctttaattattactatcatactcttggggttggtatacannnnnnnggtgt |
304 |
Q |
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|||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
35568552 |
caagaaaagcacattttcatgttaattattcctatcattttttt-gggtctttaattattactatcatactcttggggttggtgtacatttttttggtgt |
35568454 |
T |
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| Q |
305 |
acatttccaatttttcaaaaacgattctacatttttgcactttaaatgtaattat |
359 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35568453 |
acatttccaatatttcaaaaacgattctacatttttgcactttaaatgtaattat |
35568399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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