View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19499_high_15 (Length: 344)
Name: NF19499_high_15
Description: NF19499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19499_high_15 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 10 - 328
Target Start/End: Original strand, 12810367 - 12810686
Alignment:
| Q |
10 |
tcaaaggaatatgaagtttaacacgactctattaggaaaatgatgttgacgggatatatgtggaatagatgagcatttggtttaaagttttagcggcttg |
109 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||| |||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
12810367 |
tcaaaggaatatgaagtttaacacggctctattaggaaaatgatgttgacgg-atacatgtgaaatagaggagcatttggtttaaagttttagcagcttg |
12810465 |
T |
|
| Q |
110 |
ttttgggaaggaatgtgaccgtgtgaaggagggaggagaacaagtttttagatggtggaaagaaatagtgggtacttgtaaagggacaagtttaggggca |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||| |
|
|
| T |
12810466 |
ttttgggaaggaatgtgaccgtgtgaaggagggaggagcacaagtttttagatggtggaaagaaatagtgagtacttgtaaaggaacaagtttgggggca |
12810565 |
T |
|
| Q |
210 |
agggt-ggatccatga--nnnnnnnnnggtatggctaaaacaatagtgtaaaaaatatttgctcaaggaaattaaaaactgtgctattttattcaaaata |
306 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||| |||||| | ||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
12810566 |
agggtgggatccatgaattttttttttggtatggctaaaacaatagtgaaaaaaaaaattgatcaaggaaattaaaaactgtgct-ttttattcaaaata |
12810664 |
T |
|
| Q |
307 |
tcagttttagtagttttatttg |
328 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
12810665 |
tcagttttagtagttttatttg |
12810686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 328
Target Start/End: Original strand, 24912082 - 24912147
Alignment:
| Q |
263 |
atttgctcaaggaaattaaaaactgtgctattttattcaaaatatcagttttagtagttttatttg |
328 |
Q |
| |
|
|||||||||| ||||||||||||| | |||||| | |||||||| || |||||||| ||||||||| |
|
|
| T |
24912082 |
atttgctcaatgaaattaaaaactatactatttcaatcaaaataacatttttagtaattttatttg |
24912147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 328
Target Start/End: Original strand, 5006680 - 5006770
Alignment:
| Q |
238 |
tggctaaaacaatagtgtaa--aaaatatttgctcaaggaaattaaaaactgtgctattttattcaaaatatcagttttagtagttttatttg |
328 |
Q |
| |
|
|||||||||||||| |||| |||| | |||||||| ||||||||| ||| |||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
5006680 |
tggctaaaacaataaagtaataaaaaaaattgctcaatgaaattaaagacta--ctatttatttcaaaataacagttttagtagttttatttg |
5006770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 315
Target Start/End: Original strand, 42913286 - 42913362
Alignment:
| Q |
238 |
tggctaaaacaatagtgtaaaaaatatttgctcaaggaaattaaaaactgtgctattttattcaaaatatcagtttta |
315 |
Q |
| |
|
|||||||||||| | | ||||||| ||| |||||| ||||||||||||| |||||| |||||||||| |||||||| |
|
|
| T |
42913286 |
tggctaaaacaagaatataaaaaaaatt-gctcaatgaaattaaaaactaaactatttcattcaaaataacagtttta |
42913362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University