View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19499_high_19 (Length: 276)
Name: NF19499_high_19
Description: NF19499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19499_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 80 - 260
Target Start/End: Complemental strand, 17545026 - 17544846
Alignment:
| Q |
80 |
aaagttcaaactgttaagatgtgtttataaacaatggaattagtaaattaaaaagtggaaaacaagcatgttacaaaccttatccttgaaaccaagtgaa |
179 |
Q |
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| T |
17545026 |
aaagttcaaactgttaagatgtgtatataaacaatggaattagtaaataaaaaaatggaaatcaagcatgtcacaaaccttatccttgaaaccaagtgaa |
17544927 |
T |
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| Q |
180 |
agcatttcatcaacctcatccataacaaacatctttatgcaatccaggcgagtacgccccctttgcagcacgccatacaca |
260 |
Q |
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| T |
17544926 |
agcatttgatcaacctcatccataacaaacatctttatgcaatctaggcgagtacgccccctctgcagcatgtcatacaca |
17544846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 17545175 - 17545102
Alignment:
| Q |
9 |
agcagagattactccaacctgaatttcagagggaagtagcttgaagatttcatcaatctgcaacaccaatcaaa |
82 |
Q |
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| T |
17545175 |
agcagagattactccaacctgaattttgcatggtagtagcttgaagatttcatcgatctgcaacaccaatcaaa |
17545102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 99 - 220
Target Start/End: Original strand, 6250408 - 6250531
Alignment:
| Q |
99 |
tgtgtttataaacaatggaattagtaaattaaaaag-tggaaaacaagcatgtt-acaaaccttatccttgaaaccaagtgaaagcatttcatcaacctc |
196 |
Q |
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| T |
6250408 |
tgtgtttacaaacaatggaataagtaaagtcaaaaggtggaaaatgagcatattgacgtacctgatccttgaaaccacgtgaaagcatttcatcagcttc |
6250507 |
T |
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| Q |
197 |
atccataacaaacatctttatgca |
220 |
Q |
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| T |
6250508 |
atccagaacaaacatctttatgca |
6250531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 78 - 205
Target Start/End: Original strand, 6241469 - 6241601
Alignment:
| Q |
78 |
tcaaagttcaaactgttaagatgtgtttataaacaatggaattagtaaattaaa---aagtggaaaacaagcatgt--tacaaaccttatccttgaaacc |
172 |
Q |
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| T |
6241469 |
tcaaagttcaaactgataagatgtgtttataaacaatataatttgtaaagtaaaaacaaatggaaatcaagtatatcgaacaaaccttttcctcgaaatc |
6241568 |
T |
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| Q |
173 |
aagtgaaagcatttcatcaacctcatccataac |
205 |
Q |
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| T |
6241569 |
acatgaaagcatttcatcaacctcatccataac |
6241601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 6241285 - 6241347
Alignment:
| Q |
12 |
agagattactccaacctgaatttcagagggaagtagcttgaagatttcatcaatctgcaacac |
74 |
Q |
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| T |
6241285 |
agagattactccaacctgaattttgtagggcaatagctggaagattttatcgatctgcaacac |
6241347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 223
Target Start/End: Complemental strand, 42718055 - 42717994
Alignment:
| Q |
162 |
tccttgaaaccaagtgaaagcatttcatcaacctcatccataacaaacatctttatgcaatc |
223 |
Q |
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| T |
42718055 |
tccttgaaaccacgtgaaagcatttcatcagcttcatccaaaacaaacattttaatgcaatc |
42717994 |
T |
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