View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19499_high_24 (Length: 252)
Name: NF19499_high_24
Description: NF19499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19499_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 11627801 - 11627567
Alignment:
| Q |
1 |
atatgcatcatctgaagtaggagaataaagctcaaaaacccgaggagcaccaattaactataaacagaagagaaacaaaaaagattcatcatatgtgatg |
100 |
Q |
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| T |
11627801 |
atatgcatcatctgaagtaggagaataaagctcaaaaacccgaggagcaccaattaactacaaacagaagagaaacaaaaaagatccatcatatatgatg |
11627702 |
T |
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| Q |
101 |
tgcaacaaatttagcactatataattgaagagaaatcaatagatagttaatgaaaaggaaaatgaagaacatggtttaaaatacttaatgaaaagttgaa |
200 |
Q |
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| T |
11627701 |
tgcagcaaatttagcactatataa-tgaagataaatcaatagatagttaatgaaaaggaaaatgaagaacatggtttaaaaaacttaatgaaaagttgaa |
11627603 |
T |
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| Q |
201 |
attaacaacctgaatcaatagatactttgtagtttt |
236 |
Q |
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| T |
11627602 |
attaacaacctgaatcaatagatactttgtagtttt |
11627567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 153 - 236
Target Start/End: Complemental strand, 11635429 - 11635346
Alignment:
| Q |
153 |
aaaaggaaaatgaagaacatggtttaaaatacttaatgaaaagttgaaattaacaacctgaatcaatagatactttgtagtttt |
236 |
Q |
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| T |
11635429 |
aaaaggaaaatgaagaacatggtttaaaacatttaatgaaaggttgaatttaacaacctgaatcaatagatactttgcagtttt |
11635346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 31 - 112
Target Start/End: Complemental strand, 11636540 - 11636459
Alignment:
| Q |
31 |
ctcaaaaacccgaggagcaccaattaactataaacagaagagaaacaaaaaagattcatcatatgtgatgtgcaacaaattt |
112 |
Q |
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| T |
11636540 |
ctcaaaaacacgaggagcaccaattaactacaagcagaagagaaacaaataagattcaccatatgggatgtgcatcaaattt |
11636459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 11686000 - 11686062
Alignment:
| Q |
25 |
ataaagctcaaaaacccgaggagcaccaattaactataaacagaagagaaacaaaaaagattc |
87 |
Q |
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|||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||| |
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| T |
11686000 |
ataaagctcaaaaacctgaggagcaccaattaactacaaacagaagagaaacaaataagattc |
11686062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 11690012 - 11690074
Alignment:
| Q |
25 |
ataaagctcaaaaacccgaggagcaccaattaactataaacagaagagaaacaaaaaagattc |
87 |
Q |
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|||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||| |
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| T |
11690012 |
ataaagctcaaaaacctgaggagcaccaattaactacaaacagaagagaaacaaataagattc |
11690074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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