View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19499_high_6 (Length: 458)
Name: NF19499_high_6
Description: NF19499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19499_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 10 - 443
Target Start/End: Original strand, 36900023 - 36900455
Alignment:
| Q |
10 |
aagaatatctaacatatacaagacaatgaaaaagggtgcggatctattttattataatcctctcttttgagattttaattcaatcatctcttaagggagg |
109 |
Q |
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| T |
36900023 |
aagaaaatctaacatatacaagacaatgaaaaagggtgcggatctattttattataatcctctctcttgagattgtaattcaatcatctcttaagggaga |
36900122 |
T |
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| Q |
110 |
aaaatataatttattttaaatacttttaaagaaggagagtgtgattcaattttattttattttcagaggaagaaggtgtagtttactccaatattttaaa |
209 |
Q |
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| T |
36900123 |
aaaatataatttattttaaatacttttaaagaaggagagtgtgattcaattttatttt-ttttcagaggaagaagttgtagtttactccaatattttaaa |
36900221 |
T |
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| Q |
210 |
accaactgttttcattttgtaggaaaatggtttnnnnnnnngaaacaacacgacatagaagacccatcaaatgacaatcgtcgtccttttaattctgaga |
309 |
Q |
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| T |
36900222 |
accaactgttttcattttgtaggaaaatggtttaaaaaaaagaaacaacacgacatagaagacccatcaaatgacaatcgtcgtccttttaattctgaga |
36900321 |
T |
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| Q |
310 |
ataatctggaaggagttttgccaccaaattacaaaacctttcgcctatttgtcagatgtatatctgaactcactcttagactttttgtaggtatgtcttc |
409 |
Q |
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| T |
36900322 |
ataatctggaaggagttttgccaccaaattacaaaacctttcgcctatttgtcagatgtatatctgaactcactcttagactttttggaggtatgtcttc |
36900421 |
T |
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| Q |
410 |
tccacattaatttctggctacttgtatgtttatt |
443 |
Q |
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| T |
36900422 |
tccacattaatttctggctacttgtatgtttatt |
36900455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 5700930 - 5700893
Alignment:
| Q |
31 |
gacaatgaaaaagggtgcggatctattttattataatc |
68 |
Q |
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| T |
5700930 |
gacaatgaaaaagagtgcggatccattttattataatc |
5700893 |
T |
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