View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19499_high_8 (Length: 456)
Name: NF19499_high_8
Description: NF19499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19499_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Complemental strand, 103516 - 103064
Alignment:
| Q |
1 |
agacgaagacgcagggttgttgtcatcgtcgtcttcttcttctgattccgatgaagaaggtgaagtgtcatcgtcttcttcttcta------------at |
88 |
Q |
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||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| || |
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| T |
103516 |
agacgaagacgtagttttgttgtcatcgtcgtctttttcttctgattccgatgaagaagttgaagtgtcatcgtcttcttcttcttcttcttcttctgat |
103417 |
T |
|
| Q |
89 |
tccgaaattgaacaagtttcacaacggaaatctcagaatgtagaagccctaatcaaaggtaaccttattgtgaagagacagtcgttgctgccgagagtat |
188 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
103416 |
tccgaaattgaacaagtttcacaacggaaatctcagaatgtagaagccctaatcaaaggtaaccttattgtgaagagacagtcgttgctgccgagagtat |
103317 |
T |
|
| Q |
189 |
attccaccaatggagctgccgctatttgcagaaaaccgtttaaaccaccgtctgatgcttacaacaataacaataatcaagatcttgctcgtaggctctc |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
103316 |
attccaccaatggagctgccgctatttgcagaaaaccgtttaaaccaccgtccgatgcttacaacaataacaataatcaagatcttgctcgtaggctctc |
103217 |
T |
|
| Q |
289 |
tgctcgcaaaagatttgtcccatggggttctaccactcctattcctattcccacctccaccacacctttgacggagttggatttgaatatctctgatcac |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
103216 |
tgctcgcaaaagatttgtcccatggggttctaccactcctattcctattcccacctccaccacacctttgacggagttggatttgaatatctctgatcac |
103117 |
T |
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| Q |
389 |
aaagaggaggttgtcaaaccctcgccgcctttgccccctgaaattgatcctct |
441 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
103116 |
aaagaggaggctgtcaaaccctcgccgcctttgccccctgaaattgatcctct |
103064 |
T |
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