View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19499_high_9 (Length: 454)
Name: NF19499_high_9
Description: NF19499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19499_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 16 - 438
Target Start/End: Original strand, 31240872 - 31241297
Alignment:
| Q |
16 |
attatttagtgtaaatgaaacgaatggagatgatatctttaaaataaggaatgtttgatgagataggtctggttgattctgtaggagtcacacttatgtt |
115 |
Q |
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| T |
31240872 |
attatttagtgtaaatgaaacgaatggagatgatgtctttaaaataaggaatgtttgatgagataggtctggttgattctgtaggagtcacacttatgtt |
31240971 |
T |
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| Q |
116 |
gaagggggaatccatatatgggccgtaaatctagagagttgcgtttgtgatgatttcttcaaaaaacataactattacgaaattatgaatgaaataattc |
215 |
Q |
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| T |
31240972 |
gaagggggaatccatatatgggccgtaaatctagagagttgcgtttgtgatgatttcttcaaaaaacataactattacgaaattatgaatgaaataattc |
31241071 |
T |
|
| Q |
216 |
tgcaaattgaaacacaaacatgagaaatcaatttgttcgatgaaaacaacaccaaactataaattcttgaaataccactgaattgaaaagcatcaattag |
315 |
Q |
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| T |
31241072 |
tgcaaattggaacacaaacacgagaaatcaatctgttcgatgaaaacaacaccaaactataaattcttgaaataccactgaattgaaaagcaccaattag |
31241171 |
T |
|
| Q |
316 |
atgtat-taagaagggtgatcgttgatt--atgaaattgatgtatgaatgagtgatgagaggaaaattataagggtgcaagcgggcttagtatttgagag |
412 |
Q |
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| T |
31241172 |
atgtatataagaagggtgatcgttgattgaatgaaattgatgtatgaatgagtgatgagaggaaaattataagggtgcaagcgggcttagtatttgagag |
31241271 |
T |
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| Q |
413 |
attggttttatttgttgggtatataa |
438 |
Q |
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| T |
31241272 |
attggttttatttgttgggtatataa |
31241297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 4e-39; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 20 - 130
Target Start/End: Complemental strand, 35418291 - 35418181
Alignment:
| Q |
20 |
tttagtgtaaatgaaacgaatggagatgatatctttaaaataaggaatgtttgatgagataggtctggttgattctgtaggagtcacacttatgttgaag |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||| | ||||| |
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| T |
35418291 |
tttagtgtaaatgaaacgaatggagatgatatctttaaaacaaggaatgtttgatgagataggtccagttgattctataggagtcacacttaggctgaag |
35418192 |
T |
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| Q |
120 |
ggggaatccat |
130 |
Q |
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| T |
35418191 |
gaggaatccat |
35418181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 21 - 130
Target Start/End: Complemental strand, 35422671 - 35422562
Alignment:
| Q |
21 |
ttagtgtaaatgaaacgaatggagatgatatctttaaaataaggaatgtttgatgagataggtctggttgattctgtaggagtcacacttatgttgaagg |
120 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||| ||||||||||||||| | |||||| |
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| T |
35422671 |
ttagggtaaatgaaacgaatggagatgatatctttaaaacaaggaatgtttgatgagataggtcgggatgattctataggagtcacacttaggctgaagg |
35422572 |
T |
|
| Q |
121 |
gggaatccat |
130 |
Q |
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||||||||| |
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| T |
35422571 |
aggaatccat |
35422562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 265 - 341
Target Start/End: Complemental strand, 35422511 - 35422434
Alignment:
| Q |
265 |
caccaaactataaattcttgaaataccactgaattgaaaagcatcaattagatgtat-taagaagggtgatcgttgat |
341 |
Q |
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|||| |||||||||||||||||||| ||| |||| |||||||| ||||||||||||| |||||| | |||||| |||| |
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| T |
35422511 |
caccgaactataaattcttgaaataacaccgaatagaaaagcaccaattagatgtatataagaatgatgatcgctgat |
35422434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 405 - 435
Target Start/End: Complemental strand, 35418139 - 35418109
Alignment:
| Q |
405 |
tttgagagattggttttatttgttgggtata |
435 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
35418139 |
tttgagagattggttttatttgttgggtata |
35418109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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