View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19499_low_11 (Length: 409)
Name: NF19499_low_11
Description: NF19499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19499_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-100; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 55 - 399
Target Start/End: Complemental strand, 7822001 - 7821665
Alignment:
| Q |
55 |
attcacagcgggaaaagctttgggtttccatcagcagcaccatgcatta-------ataagaagtttcatatttgagaaacaatgcataaagtagctcat |
147 |
Q |
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| T |
7822001 |
attcacagcgggaaaagctttgggtttccatcagcagcaccatgcattatattataataagaagtttcatatttgagaaacaatgcataaagtagctcat |
7821902 |
T |
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| Q |
148 |
tccttgtatcaggtacaccaggaagacaccagtggcttcaatcttggcgatttgtagttgcattaggacccaaataatatttagatagatgtccatcttt |
247 |
Q |
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| T |
7821901 |
tccatgtatcaggtacaccaggaagacaccagtggcttcaatcttggcgatttgaagttgcattaggacccaaataatatttacatagatgtccatcttt |
7821802 |
T |
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| Q |
248 |
tctc-----tgttacattcaataccttaaaaaccttggaagtgtttttatgtgctaatattgcggaattggcaattttgaactgtaaccaactatcctta |
342 |
Q |
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| T |
7821801 |
tctctgacttgtcatctttgttacattcaataccttggaagtgtttttgtgtgctaatattgcagaattggcaattttgaactgtaa------------- |
7821715 |
T |
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| Q |
343 |
ggtactgatgcggacccctgttctggcattgtttccaaatgtcattttccacctttg |
399 |
Q |
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| T |
7821714 |
-------atgcggacccctgttctggcattgtttccaaatgacattttccacctttg |
7821665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 107 - 253
Target Start/End: Complemental strand, 7812411 - 7812265
Alignment:
| Q |
107 |
agaagtttcatatttgagaaacaatgcataaagtagctcattccttgtatcaggtacaccaggaagacaccagtggcttcaatcttggcgatttgtagtt |
206 |
Q |
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| T |
7812411 |
agaagtttcatatttgagaaacaatgcataaagtagctcattccatgtatcaggtacaccgggaagacaccaatggctacaatcttgacgatgtggattt |
7812312 |
T |
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| Q |
207 |
gcattaggacccaaataatatttagatagatgtccatcttttctctg |
253 |
Q |
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| T |
7812311 |
tcattagggcccaaataatatttagatgaatgtccatcttttctctg |
7812265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 398
Target Start/End: Complemental strand, 7812218 - 7812100
Alignment:
| Q |
280 |
gaagtgtttttatgtgctaatattgcggaattggcaattttgaactgtaaccaactatccttaggtactgatgcggacccctgttctggcattgtttcca |
379 |
Q |
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| T |
7812218 |
gaagtgtttgtgtgttttaatattgcagaattggcaattttgaactgtgaccagttatctttaggtaccattgaggacccaagctctggtagtgtttcca |
7812119 |
T |
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| Q |
380 |
aatgtcattttccaccttt |
398 |
Q |
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| T |
7812118 |
aatgacagtttccatcttt |
7812100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 184
Target Start/End: Complemental strand, 52614699 - 52614647
Alignment:
| Q |
132 |
gcataaagtagctcattccttgtatcaggtacaccaggaagacaccagtggct |
184 |
Q |
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| T |
52614699 |
gcataaattagctcattccatgcatcagggaccccaggaagacaccaatggct |
52614647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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