View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19499_low_13 (Length: 391)
Name: NF19499_low_13
Description: NF19499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19499_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 22 - 378
Target Start/End: Original strand, 29461435 - 29461787
Alignment:
| Q |
22 |
tacgtctccattacttctgtcttttatcttttctgtgtcaaacaacattggttacattaattaacattgcattagttaccttaatgcacaagtgaaagaa |
121 |
Q |
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| T |
29461435 |
tacgtctccattacttctgtcttttatcttttctgtgtcaaacaacattggttacattaattaacattgcattagttaccttaatgcacaagtgaaagaa |
29461534 |
T |
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| Q |
122 |
ttac--tattaatttacctaaataaaaattggttacaatcaacaattcatttttacacacgtaacattaacaacatatattaagatttttctcttnnnnn |
219 |
Q |
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| T |
29461535 |
ttactatattaatttacctaaataaaaattggttacaatcaacatttcatttttacacacgtaacattaac-----atattaagacttttctctt-aaaa |
29461628 |
T |
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| Q |
220 |
nnncatagtaaaactttcttctttatttcctttctatttttgacgaaattctaacacttatcaattaagttaataaattccaaataaagttttggcataa |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29461629 |
aaacatagtaaaactttcttctttatttcctttctatttttgacgaaattctaacacttatcaattaagttaataaattccaaataaagttttggcataa |
29461728 |
T |
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| Q |
320 |
ttttacctctcatcaaacaaatatttaatcatgatttaacttacattcattccgtattc |
378 |
Q |
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| T |
29461729 |
ttttacctctcatcaaacaaatatttaatcatgttttaacttacattcattccgtattc |
29461787 |
T |
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