View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19499_low_15 (Length: 353)

Name: NF19499_low_15
Description: NF19499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19499_low_15
NF19499_low_15
[»] chr4 (7 HSPs)
chr4 (18-145)||(45883383-45883510)
chr4 (18-141)||(56209695-56209818)
chr4 (18-147)||(45863433-45863562)
chr4 (196-276)||(45882652-45882732)
chr4 (18-144)||(47292382-47292507)
chr4 (214-277)||(45863252-45863315)
chr4 (91-144)||(54303369-54303422)
[»] chr8 (1 HSPs)
chr8 (20-145)||(7973600-7973725)
[»] chr5 (1 HSPs)
chr5 (19-141)||(10520238-10520360)
[»] chr2 (2 HSPs)
chr2 (20-145)||(24348416-24348541)
chr2 (209-261)||(24349270-24349322)


Alignment Details
Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 18 - 145
Target Start/End: Complemental strand, 45883510 - 45883383
Alignment:
Q  18 ataatttgttgaaagcagcttatgatcctcgcatttctgcagtttatcttcaaattgatactttaaattgcgattgggctaaactcgatgaaattcaaag 117  Q
    ||||||||||||||||||||||||||||||| |||||||  || |||||||||||||| | ||||||||||| ||||||||||||||||||||||| |||    
T  45883510 ataatttgttgaaagcagcttatgatcctcgtatttctggtgtgtatcttcaaattgacaatttaaattgcggttgggctaaactcgatgaaattcgaag 45883411  T
Q  118 gcagatattaaatttcagaaaatcaggt 145  Q
     ||||| |||||||||||||||||||||    
T  45883410 acagatcttaaatttcagaaaatcaggt 45883383  T

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Target: chr4; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 18 - 141
Target Start/End: Complemental strand, 56209818 - 56209695
Alignment:
Q  18 ataatttgttgaaagcagcttatgatcctcgcatttctgcagtttatcttcaaattgatactttaaattgcgattgggctaaactcgatgaaattcaaag 117  Q
    ||||| ||||||||||||||||||||| ||| |||||||| || |||||||  ||||||||||||||||| | ||||||||||||||||||||||| |||    
T  56209818 ataatatgttgaaagcagcttatgatcatcgtatttctgccgtatatcttcgtattgatactttaaattgtggttgggctaaactcgatgaaattcgaag 56209719  T
Q  118 gcagatattaaatttcagaaaatc 141  Q
    ||| || |||||||||||||||||    
T  56209718 gcaaatcttaaatttcagaaaatc 56209695  T

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Target: chr4; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 18 - 147
Target Start/End: Complemental strand, 45863562 - 45863433
Alignment:
Q  18 ataatttgttgaaagcagcttatgatcctcgcatttctgcagtttatcttcaaattgatactttaaattgcgattgggctaaactcgatgaaattcaaag 117  Q
    ||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||| ||||||||| | ||||||||||   |||||||||| |||    
T  45863562 ataatttgttgaaagcagcttatgatcctcgtatttctgccgtatatcttcaaattgataatttaaattgtggttgggctaaagctgatgaaattcgaag 45863463  T
Q  118 gcagatattaaatttcagaaaatcaggtgc 147  Q
     || || || ||||||||||||||||||||    
T  45863462 acaaatcttgaatttcagaaaatcaggtgc 45863433  T

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Target: chr4; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 196 - 276
Target Start/End: Complemental strand, 45882732 - 45882652
Alignment:
Q  196 ttgatagctgatgttgcttgtaggaaaatttgttgtggcttatctcccttcaattcgagaaaaagagtactacgttgcttg 276  Q
    ||||||| ||||| ||||||||||||||||||||||||||||| ||||||||  |||||||||||| || ||| |||||||    
T  45882732 ttgatagttgatgatgcttgtaggaaaatttgttgtggcttatgtcccttcatgtcgagaaaaagaatattacattgcttg 45882652  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 144
Target Start/End: Original strand, 47292382 - 47292507
Alignment:
Q  18 ataatttgttgaaagcagcttatgatcctcgcatttctgcagtttatcttcaaattgatactttaaattgcgattgggctaaactcgatgaaattcaaag 117  Q
    |||||||||||||||| || ||||||| ||| ||||||||||| | |||||| ||| ||  ||||||||| | ||||||||||||| ||||||||| ||     
T  47292382 ataatttgttgaaagccgcatatgatcatcgtatttctgcagtgtgtcttcatatttatcgtttaaattgtggttgggctaaactc-atgaaattcgaaa 47292480  T
Q  118 gcagatattaaatttcagaaaatcagg 144  Q
    | | ||  | |||||||||||||||||    
T  47292481 ggaaatcatgaatttcagaaaatcagg 47292507  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 277
Target Start/End: Complemental strand, 45863315 - 45863252
Alignment:
Q  214 tgtaggaaaatttgttgtggcttatctcccttcaattcgagaaaaagagtactacgttgcttgt 277  Q
    |||||| |||| |||||||||||||||||||| ||||||||||||| | || ||| ||||||||    
T  45863315 tgtagggaaatgtgttgtggcttatctccctttaattcgagaaaaataatattacattgcttgt 45863252  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 91 - 144
Target Start/End: Original strand, 54303369 - 54303422
Alignment:
Q  91 ttgggctaaactcgatgaaattcaaaggcagatattaaatttcagaaaatcagg 144  Q
    ||||| |||||| |||||||||| |||||| || ||||||||||||||||||||    
T  54303369 ttggggtaaactagatgaaattcgaaggcaaatcttaaatttcagaaaatcagg 54303422  T

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Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 20 - 145
Target Start/End: Complemental strand, 7973725 - 7973600
Alignment:
Q  20 aatttgttgaaagcagcttatgatcctcgcatttctgcagtttatcttcaaattgatactttaaattgcgattgggctaaactcgatgaaattcaaaggc 119  Q
    |||||||||||||| |||||||||||||| |||||||| || ||| ||   ||| || ||||||| |||  ||| ||||||||||||||||||||||||     
T  7973725 aatttgttgaaagccgcttatgatcctcgtatttctgctgtgtatgttgttatttatcctttaaaatgcagttgagctaaactcgatgaaattcaaaggg 7973626  T
Q  120 agatattaaatttcagaaaatcaggt 145  Q
    | ||  ||||||||||||||||||||    
T  7973625 aaatcataaatttcagaaaatcaggt 7973600  T

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Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 19 - 141
Target Start/End: Original strand, 10520238 - 10520360
Alignment:
Q  19 taatttgttgaaagcagcttatgatcctcgcatttctgcagtttatcttcaaattgatactttaaattgcgattgggctaaactcgatgaaattcaaagg 118  Q
    |||||| ||||||||||| ||||||||| | ||||| || ||||||||||| || ||   ||||| ||| | |||||||||||| ||||| |||||||||    
T  10520238 taatttcttgaaagcagcatatgatccttgtatttccgctgtttatcttcatatcgaccatttaagttggggttgggctaaacttgatgagattcaaagg 10520337  T
Q  119 cagatattaaatttcagaaaatc 141  Q
    || || |||||||||||||||||    
T  10520338 caaattttaaatttcagaaaatc 10520360  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 145
Target Start/End: Original strand, 24348416 - 24348541
Alignment:
Q  20 aatttgttgaaagcagcttatgatcctcgcatttctgcagtttatcttcaaattgatactttaaattgcgattgggctaaactcgatgaaattcaaaggc 119  Q
    ||||| ||||||||||| ||||||||||| |||||||  || ||||| || ||||||| |||| |||| |  |||| |||| | || ||||||| |||||    
T  24348416 aattttttgaaagcagcctatgatcctcgaatttctggggtctatctccatattgatagtttagattgtgggtggggtaaagtagaagaaattcgaaggc 24348515  T
Q  120 agatattaaatttcagaaaatcaggt 145  Q
    | || || ||||||| ||||||||||    
T  24348516 acatcttgaatttcaaaaaatcaggt 24348541  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 24349270 - 24349322
Alignment:
Q  209 ttgcttgtaggaaaatttgttgtggcttatctcccttcaattcgagaaaaaga 261  Q
    |||||||||||||||||||||||||||||||||||| ||  || |||||||||    
T  24349270 ttgcttgtaggaaaatttgttgtggcttatctccctacatgtcaagaaaaaga 24349322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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