View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19499_low_21 (Length: 274)
Name: NF19499_low_21
Description: NF19499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19499_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 11627785 - 11628040
Alignment:
| Q |
1 |
cttcagatgatgcatataacgtatacgaagatctttccaagaactattttagcgatccccctgatgaccaatggatccgtgcagtagatttcactccatg |
100 |
Q |
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| T |
11627785 |
cttcagatgatgcatataacgtatacgaagatctttccaagaactattttagcgatccccctgatgaccaatggatccgtgcagtagatttcactccatg |
11627884 |
T |
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| Q |
101 |
cagttgtattgggcagtcttctgctttatgtctagagcttcctagcaacagagattttccgaatttcagggaaaactttgctcagtacgaggaaagtgcg |
200 |
Q |
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| T |
11627885 |
cagttgtattgggcagtcttctgctttatgtctagagcttcctagcaacagagattttccgaatttcagggaaaactttgctcagtacgaggaaagtgcg |
11627984 |
T |
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| Q |
201 |
ggtccatacatgttggagagcggatcacctttttcttgcaatctggatgttgtccc |
256 |
Q |
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| T |
11627985 |
ggtccatacatgttggagagcggatcacctttttcttgcaatctggatgttgtccc |
11628040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 39 - 256
Target Start/End: Original strand, 11636583 - 11636800
Alignment:
| Q |
39 |
aagaactattttagcgatccccctgatgaccaatggatccgtgcagtagatttcactccatgcagttgtattgggcagtcttctgctttatgtctagagc |
138 |
Q |
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| T |
11636583 |
aagaactattacagagattcccctgatgaccaatggatccgtgcgatagatttcactccttgcaactgtattgggcagtcttccgctatatgtctagagc |
11636682 |
T |
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| Q |
139 |
ttcctagcaacagagattttccgaatttcagggaaaactttgctcagtacgaggaaagtgcgggtccatacatgttggagagcggatcacctttttcttg |
238 |
Q |
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| T |
11636683 |
tttctagtaacagagattttccgaatttcaaggaaaactgtgttcattatgaggaaatcgagggtcaatacacattggagagcggatcatctttttcttg |
11636782 |
T |
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| Q |
239 |
caatctggatgttgtccc |
256 |
Q |
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| T |
11636783 |
caatccggatgttgtccc |
11636800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 21 - 259
Target Start/End: Complemental strand, 11685981 - 11685743
Alignment:
| Q |
21 |
gtatacgaagatctttccaagaactattttagcgatccccctgatgaccaatggatccgtgcagtagatttcactccatgcagttgtattgggcagtctt |
120 |
Q |
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||||||||||||| | | ||||| |||| || ||| |||||||||| ||||||| |||| | |||||||||| || | ||||||||||||||| |||| |
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| T |
11685981 |
gtatacgaagatcctgcgaagaattattataaagattcccctgatgagcaatggacccgttccatagatttcacacctttcagttgtattgggcactctt |
11685882 |
T |
|
| Q |
121 |
ctgctttatgtctagagcttcctagcaacagagattttccgaatttcagggaaaactttgctcagtacgaggaaagtgcgggtccatacatgttggagag |
220 |
Q |
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| T |
11685881 |
cggcattatgtatagagcttcctagtaacagagattttccgaatttcagggaaaactttgctcattatgaggaaattgaggggaattacactttggagag |
11685782 |
T |
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| Q |
221 |
cggatcacctttttcttgcaatctggatgttgtccctat |
259 |
Q |
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| T |
11685781 |
agggttacctttttctcgcaatctggatgttgtccctat |
11685743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 21 - 259
Target Start/End: Complemental strand, 11689993 - 11689755
Alignment:
| Q |
21 |
gtatacgaagatctttccaagaactattttagcgatccccctgatgaccaatggatccgtgcagtagatttcactccatgcagttgtattgggcagtctt |
120 |
Q |
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||||||||||||| | | ||||| |||| || ||| |||||||||| ||||||| |||| | |||||||||| || | ||||||||||||||| |||| |
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| T |
11689993 |
gtatacgaagatcctgcgaagaattattataaagattcccctgatgagcaatggacccgttccatagatttcacacctttcagttgtattgggcactctt |
11689894 |
T |
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| Q |
121 |
ctgctttatgtctagagcttcctagcaacagagattttccgaatttcagggaaaactttgctcagtacgaggaaagtgcgggtccatacatgttggagag |
220 |
Q |
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| T |
11689893 |
cggcattatgtatagagcttcctagtaacagagattttccgaatttcagggaaaactttgctcattatgaggaaattgaggggaattacactttggagag |
11689794 |
T |
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| Q |
221 |
cggatcacctttttcttgcaatctggatgttgtccctat |
259 |
Q |
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|| | |||||||||| |||||||||||||||||||||| |
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| T |
11689793 |
agggttacctttttctcgcaatctggatgttgtccctat |
11689755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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