View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19499_low_22 (Length: 267)
Name: NF19499_low_22
Description: NF19499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19499_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 153; Significance: 4e-81; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 33730439 - 33730279
Alignment:
| Q |
1 |
atcttgatatgtaccattttgaattcatcacattactttcatgtactttacaaatatatgtcacacagcttgattactgggccactcaaaatcggctact |
100 |
Q |
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| T |
33730439 |
atcttgatatgtaccattttgaattcatcacattactttcatgtactttacaaatatatgtcacacagcttgattactgggtcactcaaaatcggctact |
33730340 |
T |
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| Q |
101 |
tcactctcaagagcacatagattggataactaattcagaggattggcaagacgatgtaaaa |
161 |
Q |
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| T |
33730339 |
tcactctcaagagcacatagattggataactaattcagaggattggcaagacgaggtaaaa |
33730279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 52 - 161
Target Start/End: Complemental strand, 33801464 - 33801355
Alignment:
| Q |
52 |
aaatatatgtcacacagcttgattactgggccactcaaaatcggctacttcactctcaagagcacatagattggataactaattcagaggattggcaaga |
151 |
Q |
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| T |
33801464 |
aaatatatgtcacacagcttgattactgggccactcaaaatcggctacttcactctcaagagcacatagattggataactaattcagaggattggcaaga |
33801365 |
T |
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| Q |
152 |
cgatgtaaaa |
161 |
Q |
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| T |
33801364 |
cgaggtaaaa |
33801355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 33801717 - 33801662
Alignment:
| Q |
1 |
atcttgatatgtaccattttgaattcatcacattactttcatgtactttacaaata |
56 |
Q |
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| T |
33801717 |
atcttgatatgtaccattttgaattcatcacattactttcatgtactttacaaata |
33801662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 6153177 - 6153337
Alignment:
| Q |
1 |
atcttgatatgtaccattttgaattca--tcacattactttcatgtactttacaaatatatgtcacacag------------cttgattactgggccact |
86 |
Q |
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| T |
6153177 |
atcttgatatgcaccattttgaactcacatcacgttactttcatgtattctgcaaatatatgtcacacagaacttttcggtacttgattactgggccact |
6153276 |
T |
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| Q |
87 |
caaaatcggctacttcactctcaagagcacatagattggataactaattcagaggattggc |
147 |
Q |
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||||||||| ||||| |||||||||| ||||||| |||| |||||||||||||| |||| |
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| T |
6153277 |
caaaatcggtggcttcattctcaagagcgcatagatcggatgactaattcagaggactggc |
6153337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 183 - 248
Target Start/End: Complemental strand, 38220409 - 38220344
Alignment:
| Q |
183 |
attaacatccaaaatacctagcttgaaatctaggaccgtccgatcttgaaccaacagtctatgtcg |
248 |
Q |
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| T |
38220409 |
attaaaatccaaaatacctagattgaaatctaggaccgtccgatcttgaaccaacagtctatgtcg |
38220344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 229
Target Start/End: Complemental strand, 38243262 - 38243216
Alignment:
| Q |
183 |
attaacatccaaaatacctagcttgaaatctaggaccgtccgatctt |
229 |
Q |
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||||| |||||||||||| |||||||||||||||||| || |||||| |
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| T |
38243262 |
attaaaatccaaaataccgagcttgaaatctaggaccttctgatctt |
38243216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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