View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19499_low_23 (Length: 260)

Name: NF19499_low_23
Description: NF19499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19499_low_23
NF19499_low_23
[»] chr5 (30 HSPs)
chr5 (64-158)||(14169139-14169230)
chr5 (64-158)||(14169324-14169415)
chr5 (184-245)||(13042590-13042651)
chr5 (154-250)||(41340325-41340419)
chr5 (181-249)||(34103601-34103669)
chr5 (174-250)||(41341501-41341577)
chr5 (182-228)||(41170702-41170748)
chr5 (184-245)||(13112588-13112649)
chr5 (174-250)||(5963729-5963805)
chr5 (184-228)||(6500890-6500934)
chr5 (184-228)||(26074680-26074724)
chr5 (189-228)||(18603171-18603210)
chr5 (189-228)||(32487461-32487500)
chr5 (193-250)||(14168980-14169037)
chr5 (184-228)||(9498700-9498744)
chr5 (184-228)||(26074192-26074236)
chr5 (184-228)||(40296361-40296405)
chr5 (184-223)||(6500523-6500562)
chr5 (189-228)||(29549306-29549345)
chr5 (189-228)||(34753076-34753115)
chr5 (189-228)||(36521947-36521986)
chr5 (184-226)||(33747841-33747883)
chr5 (189-226)||(11417028-11417065)
chr5 (189-230)||(24489257-24489298)
chr5 (199-228)||(26075223-26075252)
chr5 (189-226)||(36527146-36527183)
chr5 (184-228)||(624264-624308)
chr5 (186-230)||(2411073-2411117)
chr5 (184-228)||(3295061-3295105)
chr5 (184-228)||(25328003-25328047)
[»] chr7 (30 HSPs)
chr7 (154-250)||(48071432-48071526)
chr7 (174-254)||(27391805-27391885)
chr7 (182-230)||(1085292-1085340)
chr7 (184-228)||(7517648-7517692)
chr7 (184-228)||(11845259-11845303)
chr7 (189-228)||(1085667-1085706)
chr7 (189-228)||(22566713-22566752)
chr7 (184-246)||(21416187-21416249)
chr7 (189-227)||(23569053-23569091)
chr7 (184-230)||(30253558-30253604)
chr7 (154-250)||(8802250-8802344)
chr7 (154-250)||(8802546-8802640)
chr7 (184-225)||(30244341-30244382)
chr7 (184-228)||(23423-23467)
chr7 (184-228)||(6054628-6054672)
chr7 (184-228)||(29157633-29157677)
chr7 (184-228)||(30245145-30245189)
chr7 (184-228)||(37533410-37533454)
chr7 (184-227)||(14681579-14681622)
chr7 (184-226)||(7554095-7554137)
chr7 (190-228)||(16569264-16569302)
chr7 (190-228)||(16596360-16596398)
chr7 (189-227)||(28300304-28300342)
chr7 (182-228)||(36939777-36939823)
chr7 (184-225)||(19122802-19122843)
chr7 (184-225)||(34218080-34218121)
chr7 (184-225)||(45754786-45754827)
chr7 (184-228)||(8128487-8128531)
chr7 (184-228)||(21619091-21619135)
chr7 (184-228)||(22567085-22567129)
[»] chr6 (24 HSPs)
chr6 (181-250)||(21130100-21130169)
chr6 (154-250)||(22605038-22605132)
chr6 (154-250)||(22605273-22605367)
chr6 (184-228)||(1846816-1846860)
chr6 (184-228)||(2377822-2377866)
chr6 (189-228)||(16454643-16454682)
chr6 (184-226)||(3058296-3058338)
chr6 (182-228)||(35210272-35210318)
chr6 (184-225)||(16107749-16107790)
chr6 (184-228)||(2578489-2578533)
chr6 (184-228)||(3409327-3409371)
chr6 (184-228)||(3415526-3415570)
chr6 (184-228)||(10074037-10074081)
chr6 (184-228)||(10074409-10074453)
chr6 (184-228)||(11637767-11637811)
chr6 (184-228)||(29518571-29518615)
chr6 (184-228)||(29518988-29519032)
chr6 (189-225)||(32460631-32460667)
chr6 (184-228)||(32741247-32741291)
chr6 (189-228)||(16454975-16455014)
chr6 (189-227)||(2843624-2843662)
chr6 (189-226)||(6071202-6071239)
chr6 (189-226)||(6999847-6999884)
chr6 (189-225)||(1127431-1127467)
[»] chr3 (35 HSPs)
chr3 (183-250)||(17731949-17732016)
chr3 (183-250)||(19033180-19033247)
chr3 (184-255)||(54017594-54017665)
chr3 (174-250)||(16870995-16871071)
chr3 (174-250)||(17735027-17735103)
chr3 (174-250)||(19036296-19036372)
chr3 (184-228)||(22304001-22304045)
chr3 (182-228)||(22303703-22303749)
chr3 (184-227)||(3135500-3135543)
chr3 (189-228)||(52634743-52634782)
chr3 (190-228)||(32589771-32589809)
chr3 (184-230)||(43346837-43346883)
chr3 (174-231)||(16868419-16868476)
chr3 (189-230)||(29644632-29644673)
chr3 (184-245)||(48127861-48127922)
chr3 (184-228)||(12114608-12114652)
chr3 (184-228)||(15772922-15772966)
chr3 (184-228)||(22304637-22304681)
chr3 (184-228)||(39389138-39389182)
chr3 (174-233)||(16869833-16869892)
chr3 (189-228)||(29644953-29644992)
chr3 (193-228)||(41359820-41359855)
chr3 (189-228)||(47964569-47964608)
chr3 (190-228)||(1634366-1634404)
chr3 (184-222)||(53118021-53118059)
chr3 (184-246)||(53596010-53596072)
chr3 (184-246)||(53596325-53596387)
chr3 (183-228)||(16143506-16143551)
chr3 (189-226)||(32462609-32462646)
chr3 (184-225)||(32462946-32462987)
chr3 (184-225)||(37990685-37990726)
chr3 (189-226)||(46546376-46546413)
chr3 (184-228)||(4823723-4823767)
chr3 (184-228)||(35946590-35946634)
chr3 (189-225)||(42342141-42342177)
[»] chr4 (28 HSPs)
chr4 (189-245)||(1868102-1868158)
chr4 (189-228)||(22183313-22183352)
chr4 (189-246)||(10396466-10396523)
chr4 (184-228)||(41370425-41370469)
chr4 (184-228)||(49302974-49303018)
chr4 (184-228)||(50630799-50630843)
chr4 (184-228)||(54936264-54936308)
chr4 (182-228)||(1731689-1731735)
chr4 (184-246)||(11197276-11197338)
chr4 (184-226)||(25483406-25483448)
chr4 (189-227)||(44620422-44620460)
chr4 (189-230)||(3271853-3271894)
chr4 (184-228)||(3340875-3340919)
chr4 (189-225)||(4955366-4955402)
chr4 (184-228)||(18932793-18932837)
chr4 (184-228)||(36629305-36629349)
chr4 (184-228)||(55933168-55933212)
chr4 (189-228)||(31691220-31691259)
chr4 (181-244)||(51681590-51681653)
chr4 (189-228)||(54017644-54017683)
chr4 (184-225)||(23817725-23817766)
chr4 (184-225)||(34646693-34646734)
chr4 (184-228)||(922486-922530)
chr4 (189-225)||(15841417-15841453)
chr4 (189-225)||(32941172-32941208)
chr4 (192-228)||(49880228-49880264)
chr4 (184-228)||(50002494-50002538)
chr4 (184-228)||(54108981-54109024)
[»] chr2 (23 HSPs)
chr2 (189-228)||(29874074-29874113)
chr2 (189-233)||(36178222-36178266)
chr2 (184-228)||(36178651-36178695)
chr2 (182-230)||(37895105-37895153)
chr2 (189-228)||(14745345-14745384)
chr2 (189-228)||(14745718-14745757)
chr2 (189-228)||(15880331-15880370)
chr2 (182-228)||(37106256-37106302)
chr2 (184-228)||(6421799-6421843)
chr2 (184-228)||(28254283-28254327)
chr2 (190-226)||(35580776-35580812)
chr2 (189-228)||(962666-962705)
chr2 (189-228)||(31468801-31468840)
chr2 (199-228)||(31385805-31385834)
chr2 (184-233)||(37105987-37106036)
chr2 (189-230)||(40679680-40679721)
chr2 (184-224)||(3672773-3672813)
chr2 (184-228)||(5542671-5542715)
chr2 (184-228)||(6422178-6422222)
chr2 (184-228)||(15511541-15511585)
chr2 (192-228)||(35580494-35580530)
chr2 (189-225)||(36178320-36178356)
chr2 (184-228)||(36784306-36784350)
[»] scaffold0014 (1 HSPs)
scaffold0014 (174-255)||(197770-197849)
[»] scaffold0702 (1 HSPs)
scaffold0702 (184-228)||(560-604)
[»] scaffold0078 (1 HSPs)
scaffold0078 (184-228)||(5425-5469)
[»] chr1 (24 HSPs)
chr1 (184-228)||(17294645-17294689)
chr1 (184-226)||(45494020-45494062)
chr1 (184-225)||(29798270-29798311)
chr1 (191-228)||(44290511-44290548)
chr1 (184-228)||(5320011-5320055)
chr1 (184-228)||(26661568-26661612)
chr1 (184-228)||(26661944-26661988)
chr1 (184-228)||(34364993-34365037)
chr1 (189-228)||(22077161-22077200)
chr1 (189-228)||(32168749-32168788)
chr1 (184-226)||(37556181-37556223)
chr1 (184-226)||(38804401-38804443)
chr1 (184-226)||(41759553-41759595)
chr1 (184-225)||(3550791-3550832)
chr1 (199-228)||(44290886-44290915)
chr1 (184-228)||(14318935-14318979)
chr1 (189-225)||(19283506-19283542)
chr1 (190-230)||(30630690-30630730)
chr1 (184-228)||(32594762-32594806)
chr1 (190-230)||(34649504-34649544)
chr1 (184-228)||(39066246-39066290)
chr1 (184-228)||(41157059-41157103)
chr1 (184-228)||(41157443-41157487)
chr1 (184-228)||(44043818-44043862)
[»] chr8 (22 HSPs)
chr8 (189-228)||(3038341-3038380)
chr8 (184-227)||(30441154-30441197)
chr8 (184-229)||(147887-147932)
chr8 (184-228)||(5915935-5915979)
chr8 (184-228)||(9483233-9483277)
chr8 (174-230)||(12156694-12156750)
chr8 (184-228)||(20870619-20870663)
chr8 (184-228)||(30359339-30359383)
chr8 (189-224)||(32640583-32640618)
chr8 (189-228)||(40518139-40518178)
chr8 (184-230)||(6651560-6651606)
chr8 (184-225)||(3669758-3669799)
chr8 (184-225)||(34834947-34834988)
chr8 (184-228)||(3670128-3670172)
chr8 (189-225)||(9507853-9507889)
chr8 (184-228)||(18371707-18371750)
chr8 (182-226)||(18372038-18372082)
chr8 (189-229)||(18829893-18829933)
chr8 (184-228)||(33113413-33113457)
chr8 (184-228)||(34835277-34835321)
chr8 (184-228)||(34835543-34835587)
chr8 (184-228)||(34835809-34835853)
[»] scaffold0391 (2 HSPs)
scaffold0391 (184-228)||(1737-1781)
scaffold0391 (191-225)||(1159-1193)


Alignment Details
Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 64 - 158
Target Start/End: Complemental strand, 14169230 - 14169139
Alignment:
Q  64 ccaaaaaacaccggggatttaccataagtgtgctttctattaatgtattttgacacaaatatacacaacaattgaaagcatgcattttaacaaat 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||   ||||| ||||||||||||||||||||||    
T  14169230 ccaaaaaacaccggggatttaccataagtgtgctttctattaatgtattttgacacaaaaatac---acaatggaaagcatgcattttaacaaat 14169139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 64 - 158
Target Start/End: Complemental strand, 14169415 - 14169324
Alignment:
Q  64 ccaaaaaacaccggggatttaccataagtgtgctttctattaatgtattttgacacaaatatacacaacaattgaaagcatgcattttaacaaat 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||   ||||| ||||||||||||||||||||||    
T  14169415 ccaaaaaacaccggggatttaccataagtgtgctttctattaatgtattttgacacaaaaatac---acaatggaaagcatgcattttaacaaat 14169324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 184 - 245
Target Start/End: Complemental strand, 13042651 - 13042590
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatc 245  Q
    |||| ||||||||||||||||||||||||||||||||||||||||  ||| | |||||||||    
T  13042651 acaccacactcttatccaaaaccttaaggcaatgggtttatgggtctcctctcttatatatc 13042590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 154 - 250
Target Start/End: Complemental strand, 41340419 - 41340325
Alignment:
Q  154 caaatgtccaagatcataagagagacgtaaacactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcctttg 250  Q
    |||| |||||||| |||||||||  | ||||||| |||||||||||||||| |||||||||||| || |||| ||||||| | ||||||||| ||||    
T  41340419 caaacgtccaagaccataagaga--cttaaacaccacactcttatccaaaatcttaaggcaatgagtgtatgagttccctctcttatatatcttttg 41340325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 181 - 249
Target Start/End: Complemental strand, 34103669 - 34103601
Alignment:
Q  181 taaacactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatccttt 249  Q
    ||||||| |||||||||| |||||||||||||||||| ||||||| |||| || | |||||||||||||    
T  34103669 taaacaccacactcttattcaaaaccttaaggcaatgagtttatgagttctctctcttatatatccttt 34103601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 174 - 250
Target Start/End: Complemental strand, 41341577 - 41341501
Alignment:
Q  174 agagacgtaaacactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcctttg 250  Q
    |||||| ||||||| ||| ||||| | ||||||||||||||||| || |||||||||||| | ||||||||||||||    
T  41341577 agagacttaaacaccacattcttaccaaaaaccttaaggcaatgagtgtatgggttccctctcttatatatcctttg 41341501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 228
Target Start/End: Complemental strand, 41170748 - 41170702
Alignment:
Q  182 aaacactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||    
T  41170748 aaacaccacactcttacccaaaaccttaaggcaatgggtttatgggt 41170702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 184 - 245
Target Start/End: Complemental strand, 13112649 - 13112588
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatc 245  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||  ||| | |||||||||    
T  13112649 acaccacactcttatccaaaaccttaagacaatgggtttatgggtctcctctcttatatatc 13112588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 174 - 250
Target Start/End: Complemental strand, 5963805 - 5963729
Alignment:
Q  174 agagacgtaaacactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcctttg 250  Q
    |||||| ||||||| ||||||||| ||||||||||||||||   | | |||||||||||| | ||||||||||||||    
T  5963805 agagacttaaacaccacactcttacccaaaaccttaaggcatcagatctatgggttccctctcttatatatcctttg 5963729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 6500934 - 6500890
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||    
T  6500934 acaccacactcttatccaaaaccttaaggcaatgagtttatgggt 6500890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 26074724 - 26074680
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||    
T  26074724 acaccacactcttacccaaaaccttaaggcaatgggtttatgggt 26074680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 228
Target Start/End: Original strand, 18603171 - 18603210
Alignment:
Q  189 acactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  18603171 acactcttacccaaaaccttaaggcaatgggtttatgggt 18603210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 228
Target Start/End: Complemental strand, 32487500 - 32487461
Alignment:
Q  189 acactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  32487500 acactcttacccaaaaccttaaggcaatgggtttatgggt 32487461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 250
Target Start/End: Complemental strand, 14169037 - 14168980
Alignment:
Q  193 tcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcctttg 250  Q
    ||||| ||||||| ||||||||||| | ||||||||||||| | ||||||||||||||    
T  14169037 tcttacccaaaactttaaggcaatgagcttatgggttccctctcttatatatcctttg 14168980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 9498700 - 9498744
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| ||||||||| |||||| |||||||||||||||||||||||    
T  9498700 acaccacactcttacccaaaatcttaaggcaatgggtttatgggt 9498744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 26074192 - 26074236
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| ||||||||| ||||||||||||||||||||||| ||||||    
T  26074192 acaccacactcttacccaaaaccttaaggcaatgggttcatgggt 26074236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 40296361 - 40296405
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| ||||||||| ||||||||| ||||||||||||||||||||    
T  40296361 acaccacactcttacccaaaacctcaaggcaatgggtttatgggt 40296405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 223
Target Start/End: Complemental strand, 6500562 - 6500523
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggttta 223  Q
    |||| ||||||||| |||||||||||||||||||||||||    
T  6500562 acaccacactcttacccaaaaccttaaggcaatgggttta 6500523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 228
Target Start/End: Original strand, 29549306 - 29549345
Alignment:
Q  189 acactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||||||||||||||||||||||| |||| ||||||||||    
T  29549306 acactcttatccaaaaccttaaggtaatgtgtttatgggt 29549345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 228
Target Start/End: Original strand, 34753076 - 34753115
Alignment:
Q  189 acactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    ||||||||| |||||||||||||||||| |||||||||||    
T  34753076 acactcttacccaaaaccttaaggcaatcggtttatgggt 34753115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 228
Target Start/End: Original strand, 36521947 - 36521986
Alignment:
Q  189 acactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    ||||||||| |||||||||||||||||| |||||||||||    
T  36521947 acactcttacccaaaaccttaaggcaattggtttatgggt 36521986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 33747883 - 33747841
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgg 226  Q
    |||| |||||||||||||||| |||||||||||| ||||||||    
T  33747883 acaccacactcttatccaaaatcttaaggcaatgagtttatgg 33747841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 226
Target Start/End: Original strand, 11417028 - 11417065
Alignment:
Q  189 acactcttatccaaaaccttaaggcaatgggtttatgg 226  Q
    |||||||||  |||||||||||||||||||||||||||    
T  11417028 acactcttacacaaaaccttaaggcaatgggtttatgg 11417065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 230
Target Start/End: Original strand, 24489257 - 24489298
Alignment:
Q  189 acactcttatccaaaaccttaaggcaatgggtttatgggttc 230  Q
    |||||||||  ||||| |||||||||||||||||||||||||    
T  24489257 acactcttacgcaaaatcttaaggcaatgggtttatgggttc 24489298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 228
Target Start/End: Original strand, 26075223 - 26075252
Alignment:
Q  199 ccaaaaccttaaggcaatgggtttatgggt 228  Q
    ||||||||||||||||||||||||||||||    
T  26075223 ccaaaaccttaaggcaatgggtttatgggt 26075252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 226
Target Start/End: Original strand, 36527146 - 36527183
Alignment:
Q  189 acactcttatccaaaaccttaaggcaatgggtttatgg 226  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  36527146 acactcttatccaaaatcttaaggcaatgcgtttatgg 36527183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 624308 - 624264
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| ||||||||| ||||||||| ||||| ||||||||||||||    
T  624308 acaccacactcttacccaaaacctcaaggctatgggtttatgggt 624264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 2411117 - 2411073
Alignment:
Q  186 actacactcttatccaaaaccttaaggcaatgggtttatgggttc 230  Q
    ||||||||||||  |||||||||||||||||  ||||||||||||    
T  2411117 actacactcttactcaaaaccttaaggcaataagtttatgggttc 2411073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 3295061 - 3295105
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| |||||| || ||||||||| ||||||||||||||||||||    
T  3295061 acaccacactcatacccaaaacctcaaggcaatgggtttatgggt 3295105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 25328047 - 25328003
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| ||||||||| |||||||||||||||| | |||||||||||    
T  25328047 acaccacactcttacccaaaaccttaaggcattaggtttatgggt 25328003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 154 - 250
Target Start/End: Complemental strand, 48071526 - 48071432
Alignment:
Q  154 caaatgtccaagatcataagagagacgtaaacactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcctttg 250  Q
    |||| ||||||||||||||||||  | ||||||  ||||||||||||||||||||||| |||| |||||||| ||||||| | ||||||||||||||    
T  48071526 caaacgtccaagatcataagaga--cttaaacatcacactcttatccaaaaccttaagacaataggtttatgagttccctctcttatatatcctttg 48071432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 174 - 254
Target Start/End: Original strand, 27391805 - 27391885
Alignment:
Q  174 agagacgtaaacactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcctttgcttc 254  Q
    |||||| ||||||| ||||||||| | |||||||||||||| ||| |||||||||| | | | ||||||||||||||||||    
T  27391805 agagacttaaacaccacactcttacctaaaaccttaaggcagtggatttatgggtttcatgtcttatatatcctttgcttc 27391885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 230
Target Start/End: Original strand, 1085292 - 1085340
Alignment:
Q  182 aaacactacactcttatccaaaaccttaaggcaatgggtttatgggttc 230  Q
    |||||| ||||||||| ||||||||||||||||||| ||||||||||||    
T  1085292 aaacaccacactcttacccaaaaccttaaggcaatgagtttatgggttc 1085340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 7517692 - 7517648
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||    
T  7517692 acaccacactcttacccaaaaccttaaggcaatgggtttatgggt 7517648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 11845303 - 11845259
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| |||||||||||||||||||||||||||||| |||||||||    
T  11845303 acaccacactcttatccaaaaccttaaggcaatggatttatgggt 11845259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 228
Target Start/End: Original strand, 1085667 - 1085706
Alignment:
Q  189 acactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  1085667 acactcttacccaaaaccttaaggcaatgggtttatgggt 1085706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 228
Target Start/End: Original strand, 22566713 - 22566752
Alignment:
Q  189 acactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  22566713 acactcttacccaaaaccttaaggcaatgggtttatgggt 22566752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 246
Target Start/End: Original strand, 21416187 - 21416249
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcc 246  Q
    |||| ||||||||| |||||||| |||||||||||||||||||||  ||| | ||||||||||    
T  21416187 acaccacactcttacccaaaaccctaaggcaatgggtttatgggtctcctctcttatatatcc 21416249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 227
Target Start/End: Original strand, 23569053 - 23569091
Alignment:
Q  189 acactcttatccaaaaccttaaggcaatgggtttatggg 227  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  23569053 acactcttacccaaaaccttaaggcaatgggtttatggg 23569091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 230
Target Start/End: Complemental strand, 30253604 - 30253558
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggttc 230  Q
    |||| ||||||||| ||||||||||||||||||| ||||||||||||    
T  30253604 acaccacactcttacccaaaaccttaaggcaatgagtttatgggttc 30253558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 250
Target Start/End: Complemental strand, 8802344 - 8802250
Alignment:
Q  154 caaatgtccaagatcataagagagacgtaaacactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcctttg 250  Q
    |||| |||||||| |||||||||  | ||||||| || ||||||  |||||| | ||| ||||| ||||||||||||||| | ||||||||||||||    
T  8802344 caaacgtccaagaccataagaga--cttaaacaccacgctcttactcaaaacataaagacaatgagtttatgggttccctctcttatatatcctttg 8802250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 250
Target Start/End: Complemental strand, 8802640 - 8802546
Alignment:
Q  154 caaatgtccaagatcataagagagacgtaaacactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcctttg 250  Q
    |||||||||| || |||||||||  | ||||||| ||||||||| |||||| |||||  || || ||||||||||||||  | ||||||||||||||    
T  8802640 caaatgtccatgaccataagaga--cttaaacaccacactcttacccaaaatcttaaaacagtgagtttatgggttccccctcttatatatcctttg 8802546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 30244382 - 30244341
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatg 225  Q
    |||| ||||||||| |||||||||||||||||||||||||||    
T  30244382 acaccacactcttacccaaaaccttaaggcaatgggtttatg 30244341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 23423 - 23467
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| ||||||||| |||||||||||||||||| |||||||||||    
T  23423 acaccacactcttacccaaaaccttaaggcaataggtttatgggt 23467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 6054672 - 6054628
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| ||||||||| ||||||||||||||||||| ||||||||||    
T  6054672 acaccacactcttacccaaaaccttaaggcaatgtgtttatgggt 6054628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 29157677 - 29157633
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| ||||||||| |||||||||||||||||||| |||||||||    
T  29157677 acaccacactcttacccaaaaccttaaggcaatggatttatgggt 29157633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 30245189 - 30245145
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| ||||||||| ||||||||||||||||||| ||||||||||    
T  30245189 acaccacactcttacccaaaaccttaaggcaatgagtttatgggt 30245145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 37533410 - 37533454
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| ||||||||| |||||||||||||||||||| |||||||||    
T  37533410 acaccacactcttacccaaaaccttaaggcaatggatttatgggt 37533454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 14681622 - 14681579
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatggg 227  Q
    |||| ||||||||| ||||||||||||| |||||||||||||||    
T  14681622 acaccacactcttacccaaaaccttaagacaatgggtttatggg 14681579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 7554137 - 7554095
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgg 226  Q
    |||| ||||||||| ||||||||||||||| ||||||||||||    
T  7554137 acaccacactcttacccaaaaccttaaggctatgggtttatgg 7554095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 228
Target Start/End: Complemental strand, 16569302 - 16569264
Alignment:
Q  190 cactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||||||| | ||||||||||||||||||||||||||||    
T  16569302 cactcttaccaaaaaccttaaggcaatgggtttatgggt 16569264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 228
Target Start/End: Original strand, 16596360 - 16596398
Alignment:
Q  190 cactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||||||| | ||||||||||||||||||||||||||||    
T  16596360 cactcttaccaaaaaccttaaggcaatgggtttatgggt 16596398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 227
Target Start/End: Original strand, 28300304 - 28300342
Alignment:
Q  189 acactcttatccaaaaccttaaggcaatgggtttatggg 227  Q
    ||||||||| |||||| ||||||||||||||||||||||    
T  28300304 acactcttacccaaaatcttaaggcaatgggtttatggg 28300342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 228
Target Start/End: Original strand, 36939777 - 36939823
Alignment:
Q  182 aaacactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||||| ||||| ||| |||||||||||||||||||| |||||||||    
T  36939777 aaacaccacacttttacccaaaaccttaaggcaatggatttatgggt 36939823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 19122843 - 19122802
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatg 225  Q
    |||| ||||||||| |||||||||||||||||||| ||||||    
T  19122843 acaccacactcttacccaaaaccttaaggcaatggatttatg 19122802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 34218080 - 34218121
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatg 225  Q
    |||| ||||||||| ||||||||||||| |||||||||||||    
T  34218080 acaccacactcttacccaaaaccttaagacaatgggtttatg 34218121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 45754827 - 45754786
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatg 225  Q
    |||| ||||||||| ||||||||||||||| |||||||||||    
T  45754827 acaccacactcttacccaaaaccttaaggctatgggtttatg 45754786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 8128487 - 8128531
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| ||||||||| ||||||||||||||  ||||||||||||||    
T  8128487 acaccacactcttaaccaaaaccttaaggttatgggtttatgggt 8128531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 21619091 - 21619135
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| ||||| ||| ||||||||||||| ||||||||||||||||    
T  21619091 acaccacacttttacccaaaaccttaagacaatgggtttatgggt 21619135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 22567085 - 22567129
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| ||||||||| | ||||||||||||||||| ||||||||||    
T  22567085 acaccacactcttaccaaaaaccttaaggcaatgagtttatgggt 22567129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 181 - 250
Target Start/End: Original strand, 21130100 - 21130169
Alignment:
Q  181 taaacactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcctttg 250  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||| | ||||||||| ||||    
T  21130100 taaacaccacactcttatccaaaaccttaaggcaatggatttatgggttccctctcttatatatcttttg 21130169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 22605038 - 22605132
Alignment:
Q  154 caaatgtccaagatcataagagagacgtaaacactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcctttg 250  Q
    ||||||||||||| ||||||||||   |||||||  ||||||||||||||| ||||||  ||||||||||||| |||||| | ||||||||||||||    
T  22605038 caaatgtccaagaccataagagagt--taaacacctcactcttatccaaaagcttaagaaaatgggtttatggattccctctcttatatatcctttg 22605132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 22605273 - 22605367
Alignment:
Q  154 caaatgtccaagatcataagagagacgtaaacactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcctttg 250  Q
    |||| |||||||| |||||||||  | ||||||| ||| ||||| ||||||||||||||||||||||||||||||| ||  | ||||||||||||||    
T  22605273 caaacgtccaagaccataagaga--cttaaacaccacattcttacccaaaaccttaaggcaatgggtttatgggtttccactcttatatatcctttg 22605367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 1846860 - 1846816
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| |||||||||||||||||||||||||||||| |||||||||    
T  1846860 acaccacactcttatccaaaaccttaaggcaatggatttatgggt 1846816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 2377866 - 2377822
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||    
T  2377866 acaccacactcttacccaaaaccttaaggcaatgggtttatgggt 2377822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 228
Target Start/End: Complemental strand, 16454682 - 16454643
Alignment:
Q  189 acactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  16454682 acactcttatccaaaatcttaaggcaatgggtttatgggt 16454643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 3058338 - 3058296
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgg 226  Q
    |||| ||||||||| ||||||||||||||||||||||||||||    
T  3058338 acaccacactcttacccaaaaccttaaggcaatgggtttatgg 3058296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 182 - 228
Target Start/End: Complemental strand, 35210318 - 35210272
Alignment:
Q  182 aaacactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||||| ||||||||| |||||||||||||||||||| |||||||||    
T  35210318 aaacaccacactcttacccaaaaccttaaggcaatggttttatgggt 35210272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 16107790 - 16107749
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatg 225  Q
    |||| ||||||||| |||||||||||||||||||||||||||    
T  16107790 acaccacactcttacccaaaaccttaaggcaatgggtttatg 16107749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 2578489 - 2578533
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| ||||||||| ||||||||||||||| ||||||||||||||    
T  2578489 acaccacactcttacccaaaaccttaaggctatgggtttatgggt 2578533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 3409371 - 3409327
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| ||||||||| ||||||||||||||||||| ||||||||||    
T  3409371 acaccacactcttacccaaaaccttaaggcaatgagtttatgggt 3409327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 3415570 - 3415526
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| ||||||||| | ||||||||||||||||||||||||||||    
T  3415570 acaccacactcttaccaaaaaccttaaggcaatgggtttatgggt 3415526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 10074037 - 10074081
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| ||||| ||| ||||||||||||||||||||||||||||||    
T  10074037 acaccacacttttacccaaaaccttaaggcaatgggtttatgggt 10074081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 10074409 - 10074453
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| ||||||||| ||||||||||||||||||| ||||||||||    
T  10074409 acaccacactcttacccaaaaccttaaggcaatgagtttatgggt 10074453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 11637767 - 11637811
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| |||||||||||||||| |||||| ||||||||||||||||    
T  11637767 acaccacactcttatccaaaatcttaagacaatgggtttatgggt 11637811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 29518615 - 29518571
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| ||||||||| |||||||||||||| |||||||||||||||    
T  29518615 acaccacactcttacccaaaaccttaaggtaatgggtttatgggt 29518571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 29519032 - 29518988
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| ||||||||| |||||||||||||| |||||||||||||||    
T  29519032 acaccacactcttacccaaaaccttaaggtaatgggtttatgggt 29518988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 225
Target Start/End: Original strand, 32460631 - 32460667
Alignment:
Q  189 acactcttatccaaaaccttaaggcaatgggtttatg 225  Q
    ||||||||| |||||||||||||||||||||||||||    
T  32460631 acactcttacccaaaaccttaaggcaatgggtttatg 32460667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 32741291 - 32741247
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| ||||||||| |||||||||||||| |||||||||||||||    
T  32741291 acaccacactcttacccaaaaccttaaggtaatgggtttatgggt 32741247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 228
Target Start/End: Complemental strand, 16455014 - 16454975
Alignment:
Q  189 acactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    ||||||||| |||||||||||||||||| |||||||||||    
T  16455014 acactcttacccaaaaccttaaggcaataggtttatgggt 16454975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 227
Target Start/End: Complemental strand, 2843662 - 2843624
Alignment:
Q  189 acactcttatccaaaaccttaaggcaatgggtttatggg 227  Q
    ||||||||| ||||||||||||||||||| |||||||||    
T  2843662 acactcttacccaaaaccttaaggcaatgagtttatggg 2843624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 226
Target Start/End: Complemental strand, 6071239 - 6071202
Alignment:
Q  189 acactcttatccaaaaccttaaggcaatgggtttatgg 226  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  6071239 acactcttatccaaaatcttaaggcaatgagtttatgg 6071202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 226
Target Start/End: Original strand, 6999847 - 6999884
Alignment:
Q  189 acactcttatccaaaaccttaaggcaatgggtttatgg 226  Q
    |||||||||||||||||||||||||| || ||||||||    
T  6999847 acactcttatccaaaaccttaaggcagtgagtttatgg 6999884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 225
Target Start/End: Complemental strand, 1127467 - 1127431
Alignment:
Q  189 acactcttatccaaaaccttaaggcaatgggtttatg 225  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  1127467 acactcttacccaaaaccttaaggtaatgggtttatg 1127431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 183 - 250
Target Start/End: Original strand, 17731949 - 17732016
Alignment:
Q  183 aacactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcctttg 250  Q
    ||||| |||||||||  |||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  17731949 aacaccacactcttactcaaaaccttaaggcaatgggtttatgggttccctttcttatatatcctttg 17732016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 183 - 250
Target Start/End: Original strand, 19033180 - 19033247
Alignment:
Q  183 aacactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcctttg 250  Q
    ||||| |||||||||  |||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  19033180 aacaccacactcttactcaaaaccttaaggcaatgggtttatgggttccctttcttatatatcctttg 19033247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 184 - 255
Target Start/End: Original strand, 54017594 - 54017665
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcctttgcttct 255  Q
    |||| ||||||||| |||||||||||||||||||||||||||| |||||| | |||||||||||||| ||||    
T  54017594 acaccacactcttacccaaaaccttaaggcaatgggtttatggattccctctcttatatatcctttgtttct 54017665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 174 - 250
Target Start/End: Original strand, 16870995 - 16871071
Alignment:
Q  174 agagacgtaaacactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcctttg 250  Q
    |||||| ||||||| ||||||||| | ||||||||||||||||| ||||||||||||||| | |||||||| |||||    
T  16870995 agagacttaaacacgacactcttacctaaaaccttaaggcaatgagtttatgggttccctctcttatatattctttg 16871071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 174 - 250
Target Start/End: Original strand, 17735027 - 17735103
Alignment:
Q  174 agagacgtaaacactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcctttg 250  Q
    |||||| |||||||  |||||||| ||||||||||||| ||||| ||||||||||||||| | ||||||||| ||||    
T  17735027 agagacttaaacaccgcactcttacccaaaaccttaagtcaatgagtttatgggttccctctcttatatatcttttg 17735103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 174 - 250
Target Start/End: Original strand, 19036296 - 19036372
Alignment:
Q  174 agagacgtaaacactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcctttg 250  Q
    |||||| |||||||  |||||||| ||||||||||||| ||||| ||||||||||||||| | ||||||||| ||||    
T  19036296 agagacttaaacaccgcactcttacccaaaaccttaagtcaatgagtttatgggttccctctcttatatatcttttg 19036372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 22304001 - 22304045
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| ||||||||||||||||||||||||||||||||||||||||    
T  22304001 acaccacactcttatccaaaaccttaaggcaatgggtttatgggt 22304045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 228
Target Start/End: Original strand, 22303703 - 22303749
Alignment:
Q  182 aaacactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||    
T  22303703 aaacaccacactcttacccaaaaccttaaggcaatgggtttatgggt 22303749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 3135500 - 3135543
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatggg 227  Q
    |||| ||||||||||| |||||||||||||||||||||||||||    
T  3135500 acaccacactcttatctaaaaccttaaggcaatgggtttatggg 3135543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 228
Target Start/End: Complemental strand, 52634782 - 52634743
Alignment:
Q  189 acactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  52634782 acactcttacccaaaaccttaaggcaatgggtttatgggt 52634743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 228
Target Start/End: Complemental strand, 32589809 - 32589771
Alignment:
Q  190 cactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  32589809 cactcttacccaaaaccttaaggcaatgggtttatgggt 32589771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 230
Target Start/End: Original strand, 43346837 - 43346883
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggttc 230  Q
    |||| ||||||||| ||||||||||||||||||| ||||||||||||    
T  43346837 acaccacactcttacccaaaaccttaaggcaatgagtttatgggttc 43346883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 231
Target Start/End: Original strand, 16868419 - 16868476
Alignment:
Q  174 agagacgtaaacactacactcttatccaaaaccttaaggcaatgggtttatgggttcc 231  Q
    |||||| ||||||  |||||||||||||||| |||||||||||| |||||||| ||||    
T  16868419 agagacttaaacatcacactcttatccaaaatcttaaggcaatgagtttatggattcc 16868476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 230
Target Start/End: Original strand, 29644632 - 29644673
Alignment:
Q  189 acactcttatccaaaaccttaaggcaatgggtttatgggttc 230  Q
    ||||||||| ||||||||||||| ||||||||||||||||||    
T  29644632 acactcttacccaaaaccttaagacaatgggtttatgggttc 29644673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 245
Target Start/End: Original strand, 48127861 - 48127922
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatc 245  Q
    |||| ||||||||||||||||| |||| |||||||||||||||||  ||| | |||||||||    
T  48127861 acaccacactcttatccaaaacattaaagcaatgggtttatgggtctcctctcttatatatc 48127922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 12114608 - 12114652
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| ||||||||| ||||||||||||| ||||||||||||||||    
T  12114608 acaccacactcttacccaaaaccttaagacaatgggtttatgggt 12114652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 15772966 - 15772922
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| |||||||||||||||||||||| |||||| ||||||||||    
T  15772966 acaccacactcttatccaaaaccttaaagcaatgagtttatgggt 15772922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 22304681 - 22304637
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| ||||||||| ||||||||||||||||||| ||||||||||    
T  22304681 acaccacactcttacccaaaaccttaaggcaatgtgtttatgggt 22304637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 39389182 - 39389138
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| ||||||||| ||||||||||||| ||||||||||||||||    
T  39389182 acaccacactcttacccaaaaccttaagacaatgggtttatgggt 39389138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 233
Target Start/End: Original strand, 16869833 - 16869892
Alignment:
Q  174 agagacgtaaacactacactcttatccaaaaccttaaggcaatgggtttatgggttccct 233  Q
    |||||| ||||||| ||||||||   |||||||||||||||||| ||||||| |||||||    
T  16869833 agagacttaaacaccacactcttgctcaaaaccttaaggcaatgagtttatgtgttccct 16869892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 228
Target Start/End: Original strand, 29644953 - 29644992
Alignment:
Q  189 acactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    ||||||||| ||||||||||||| ||||||||||||||||    
T  29644953 acactcttacccaaaaccttaagacaatgggtttatgggt 29644992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 228
Target Start/End: Original strand, 41359820 - 41359855
Alignment:
Q  193 tcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    ||||| ||||||||||||||||||||||||||||||    
T  41359820 tcttacccaaaaccttaaggcaatgggtttatgggt 41359855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 228
Target Start/End: Original strand, 47964569 - 47964608
Alignment:
Q  189 acactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    ||||||||| |||||||||||||||||| |||||||||||    
T  47964569 acactcttacccaaaaccttaaggcaataggtttatgggt 47964608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 228
Target Start/End: Original strand, 1634366 - 1634404
Alignment:
Q  190 cactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||||||| ||||||||||||| ||||||||||||||||    
T  1634366 cactcttacccaaaaccttaagccaatgggtttatgggt 1634404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 222
Target Start/End: Original strand, 53118021 - 53118059
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggttt 222  Q
    |||||||||||||| |||||| |||||||||||||||||    
T  53118021 acactacactcttacccaaaatcttaaggcaatgggttt 53118059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 246
Target Start/End: Complemental strand, 53596072 - 53596010
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcc 246  Q
    |||| ||||||||| |||||||||||||| || ||||||||||||  ||| | ||||||||||    
T  53596072 acaccacactcttacccaaaaccttaaggtaacgggtttatgggtctcctctcttatatatcc 53596010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 246
Target Start/End: Complemental strand, 53596387 - 53596325
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcc 246  Q
    |||| ||||||||| |||||||||||||| || ||||||||||||  ||| | ||||||||||    
T  53596387 acaccacactcttacccaaaaccttaaggtaacgggtttatgggtctcctctcttatatatcc 53596325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 16143551 - 16143506
Alignment:
Q  183 aacactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    ||||||||||||||| ||||||| ||||||||||| | ||||||||    
T  16143551 aacactacactcttacccaaaactttaaggcaatgagcttatgggt 16143506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 226
Target Start/End: Original strand, 32462609 - 32462646
Alignment:
Q  189 acactcttatccaaaaccttaaggcaatgggtttatgg 226  Q
    |||||||||||||||||||||| ||||| |||||||||    
T  32462609 acactcttatccaaaaccttaaagcaataggtttatgg 32462646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 32462946 - 32462987
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatg 225  Q
    |||| |||||||||  ||||||||||||||||||||||||||    
T  32462946 acaccacactcttactcaaaaccttaaggcaatgggtttatg 32462987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 37990685 - 37990726
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatg 225  Q
    |||| ||||||||| ||||||||||||||||||| |||||||    
T  37990685 acaccacactcttacccaaaaccttaaggcaatgagtttatg 37990726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 226
Target Start/End: Original strand, 46546376 - 46546413
Alignment:
Q  189 acactcttatccaaaaccttaaggcaatgggtttatgg 226  Q
    |||||||||  |||||||||||||||||||||||||||    
T  46546376 acactcttacacaaaaccttaaggcaatgggtttatgg 46546413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 4823767 - 4823723
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| ||||||||| |||||| |||||||||||| ||||||||||    
T  4823767 acaccacactcttacccaaaatcttaaggcaatgagtttatgggt 4823723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 35946634 - 35946590
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| ||||| ||| ||||||||||||||||| ||||||||||||    
T  35946634 acaccacacttttacccaaaaccttaaggcaacgggtttatgggt 35946590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 225
Target Start/End: Original strand, 42342141 - 42342177
Alignment:
Q  189 acactcttatccaaaaccttaaggcaatgggtttatg 225  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  42342141 acactcttacccaaaaccttaaggcaatgagtttatg 42342177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 189 - 245
Target Start/End: Complemental strand, 1868158 - 1868102
Alignment:
Q  189 acactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatc 245  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||| | |||||||||    
T  1868158 acactcttacccaaaactttaaggcaatgggtttatgggttccctctcttatatatc 1868102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 228
Target Start/End: Original strand, 22183313 - 22183352
Alignment:
Q  189 acactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  22183313 acactcttatccaaaaccttaaggcaatgggtttatgggt 22183352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 246
Target Start/End: Complemental strand, 10396523 - 10396466
Alignment:
Q  189 acactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcc 246  Q
    |||||||||||||||||| |||||||||||||||||||||  ||| | ||||||||||    
T  10396523 acactcttatccaaaaccctaaggcaatgggtttatgggtctcctctcttatatatcc 10396466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 41370469 - 41370425
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||    
T  41370469 acactacactcttacccaaaactttaaggcaatgggtttatgggt 41370425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 49303018 - 49302974
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||    
T  49303018 acaccacactcttacccaaaaccttaaggcaatgggtttatgggt 49302974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 50630799 - 50630843
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||    
T  50630799 acaccacactcttacccaaaaccttaaggcaatgggtttatgggt 50630843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 54936308 - 54936264
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||    
T  54936308 acaccacactcttacccaaaaccttaaggcaatgggtttatgggt 54936264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 182 - 228
Target Start/End: Original strand, 1731689 - 1731735
Alignment:
Q  182 aaacactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||||| ||||||||| |||||||||||||||||| |||||||||||    
T  1731689 aaacaccacactcttacccaaaaccttaaggcaattggtttatgggt 1731735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 246
Target Start/End: Complemental strand, 11197338 - 11197276
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcc 246  Q
    |||| ||||||||| |||||||| |||||||||||||||||||||  ||| | ||||||||||    
T  11197338 acaccacactcttacccaaaaccctaaggcaatgggtttatgggtctcctctcttatatatcc 11197276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 25483448 - 25483406
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgg 226  Q
    |||| ||||||||| ||||||||||||||||||||||||||||    
T  25483448 acaccacactcttacccaaaaccttaaggcaatgggtttatgg 25483406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 227
Target Start/End: Complemental strand, 44620460 - 44620422
Alignment:
Q  189 acactcttatccaaaaccttaaggcaatgggtttatggg 227  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  44620460 acactcttacccaaaaccttaaggcaatgggtttatggg 44620422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 230
Target Start/End: Complemental strand, 3271894 - 3271853
Alignment:
Q  189 acactcttatccaaaaccttaaggcaatgggtttatgggttc 230  Q
    ||||||||| |||||||||||||||||| |||||||||||||    
T  3271894 acactcttacccaaaaccttaaggcaataggtttatgggttc 3271853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 3340919 - 3340875
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| ||||||||| |||||||||||||||| |||||||||||||    
T  3340919 acaccacactcttacccaaaaccttaaggcagtgggtttatgggt 3340875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 225
Target Start/End: Original strand, 4955366 - 4955402
Alignment:
Q  189 acactcttatccaaaaccttaaggcaatgggtttatg 225  Q
    ||||||||| |||||||||||||||||||||||||||    
T  4955366 acactcttacccaaaaccttaaggcaatgggtttatg 4955402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 18932793 - 18932837
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| ||||||||| | ||||||||||||||||||||||||||||    
T  18932793 acaccacactcttacctaaaaccttaaggcaatgggtttatgggt 18932837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 36629349 - 36629305
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| ||||||||| ||||||||||||||||||| ||||||||||    
T  36629349 acaccacactcttacccaaaaccttaaggcaatgagtttatgggt 36629305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 55933168 - 55933212
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| ||||||||| ||||||| ||||||||||||||||||||||    
T  55933168 acaccacactcttacccaaaactttaaggcaatgggtttatgggt 55933212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 228
Target Start/End: Complemental strand, 31691259 - 31691220
Alignment:
Q  189 acactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    ||||||||| ||||||||||||||||||| ||||||||||    
T  31691259 acactcttacccaaaaccttaaggcaatgagtttatgggt 31691220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 244
Target Start/End: Complemental strand, 51681653 - 51681590
Alignment:
Q  181 taaacactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatat 244  Q
    ||||||| ||||||||| |||||| ||||||||||||||| |||| || |||| | ||||||||    
T  51681653 taaacaccacactcttacccaaaatcttaaggcaatgggtatatgagtcccctctcttatatat 51681590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 228
Target Start/End: Original strand, 54017644 - 54017683
Alignment:
Q  189 acactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    ||||||||| | ||||||||||||||||||||||||||||    
T  54017644 acactcttacctaaaaccttaaggcaatgggtttatgggt 54017683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 23817725 - 23817766
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatg 225  Q
    |||| ||||||||| ||||||||||||||||||| |||||||    
T  23817725 acaccacactcttacccaaaaccttaaggcaatgagtttatg 23817766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 34646693 - 34646734
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatg 225  Q
    |||| ||||||||| ||||||||||||||||||| |||||||    
T  34646693 acaccacactcttacccaaaaccttaaggcaatgagtttatg 34646734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 922530 - 922486
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| ||||||||||||||| || |||| ||||||||||||||||    
T  922530 acaccacactcttatccaaacccctaagacaatgggtttatgggt 922486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 225
Target Start/End: Original strand, 15841417 - 15841453
Alignment:
Q  189 acactcttatccaaaaccttaaggcaatgggtttatg 225  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  15841417 acactcttacccaaaaccttaaggcaatgtgtttatg 15841453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 225
Target Start/End: Original strand, 32941172 - 32941208
Alignment:
Q  189 acactcttatccaaaaccttaaggcaatgggtttatg 225  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  32941172 acactcttacccaaaaccttaaggcaatgagtttatg 32941208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 228
Target Start/End: Complemental strand, 49880264 - 49880228
Alignment:
Q  192 ctcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||||| |||||||||||||||| |||||||||||||    
T  49880264 ctcttacccaaaaccttaaggcagtgggtttatgggt 49880228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 50002538 - 50002494
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| ||||||||| ||||||||||||| |||||| |||||||||    
T  50002538 acaccacactcttacccaaaaccttaagacaatggatttatgggt 50002494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 54109024 - 54108981
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| ||||||||| ||||||| ||||||||||||||||||||||    
T  54109024 acaccacactcttacccaaaac-ttaaggcaatgggtttatgggt 54108981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 228
Target Start/End: Original strand, 29874074 - 29874113
Alignment:
Q  189 acactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  29874074 acactcttatccaaaaccttaaggcaatgggtttatgggt 29874113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 36178222 - 36178266
Alignment:
Q  189 acactcttatccaaaaccttaaggcaatgggtttatgggttccct 233  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||    
T  36178222 acactcttacccaaaatcttaaggcaatgggtttatgggttccct 36178266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 36178651 - 36178695
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||    
T  36178651 acaccacactcttacccaaaaccttaaggcaatgggtttatgggt 36178695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 230
Target Start/End: Original strand, 37895105 - 37895153
Alignment:
Q  182 aaacactacactcttatccaaaaccttaaggcaatgggtttatgggttc 230  Q
    |||||| ||||||||| ||||||||||||||||||||||||||| ||||    
T  37895105 aaacaccacactcttacccaaaaccttaaggcaatgggtttatgtgttc 37895153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 228
Target Start/End: Original strand, 14745345 - 14745384
Alignment:
Q  189 acactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  14745345 acactcttacccaaaaccttaaggcaatgggtttatgggt 14745384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 228
Target Start/End: Original strand, 14745718 - 14745757
Alignment:
Q  189 acactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  14745718 acactcttacccaaaaccttaaggcaatgggtttatgggt 14745757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 228
Target Start/End: Complemental strand, 15880370 - 15880331
Alignment:
Q  189 acactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  15880370 acactcttacccaaaaccttaaggcaatgggtttatgggt 15880331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 182 - 228
Target Start/End: Complemental strand, 37106302 - 37106256
Alignment:
Q  182 aaacactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||||| ||||||||| |||||||||||||| |||||||||||||||    
T  37106302 aaacaccacactcttacccaaaaccttaaggaaatgggtttatgggt 37106256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 6421843 - 6421799
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| ||||||||| |||||||||||||||||| |||||||||||    
T  6421843 acaccacactcttacccaaaaccttaaggcaataggtttatgggt 6421799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 28254283 - 28254327
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| ||||||||| ||||||||||||||||||| ||||||||||    
T  28254283 acaccacactcttacccaaaaccttaaggcaatgagtttatgggt 28254327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 226
Target Start/End: Original strand, 35580776 - 35580812
Alignment:
Q  190 cactcttatccaaaaccttaaggcaatgggtttatgg 226  Q
    |||||||| ||||||||||||||||||||||||||||    
T  35580776 cactcttacccaaaaccttaaggcaatgggtttatgg 35580812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 228
Target Start/End: Complemental strand, 962705 - 962666
Alignment:
Q  189 acactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    ||||||||| ||||||||||||| ||||||||||||||||    
T  962705 acactcttacccaaaaccttaagacaatgggtttatgggt 962666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 228
Target Start/End: Original strand, 31468801 - 31468840
Alignment:
Q  189 acactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    ||||||||| ||||||||||||||||||| ||||||||||    
T  31468801 acactcttacccaaaaccttaaggcaatgagtttatgggt 31468840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 228
Target Start/End: Complemental strand, 31385834 - 31385805
Alignment:
Q  199 ccaaaaccttaaggcaatgggtttatgggt 228  Q
    ||||||||||||||||||||||||||||||    
T  31385834 ccaaaaccttaaggcaatgggtttatgggt 31385805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 233
Target Start/End: Complemental strand, 37106036 - 37105987
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggttccct 233  Q
    |||| ||||||||| |||||| |||||||||||| |||||||||| ||||    
T  37106036 acaccacactcttacccaaaatcttaaggcaatgagtttatgggtcccct 37105987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 230
Target Start/End: Original strand, 40679680 - 40679721
Alignment:
Q  189 acactcttatccaaaaccttaaggcaatgggtttatgggttc 230  Q
    ||||||||| |||||| |||||||| ||||||||||||||||    
T  40679680 acactcttacccaaaatcttaaggcgatgggtttatgggttc 40679721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 3672813 - 3672773
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttat 224  Q
    |||| ||||||||| |||||| |||||||||||||||||||    
T  3672813 acaccacactcttacccaaaatcttaaggcaatgggtttat 3672773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 5542671 - 5542715
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| ||||||||| | |||||||||||||||| |||||||||||    
T  5542671 acaccacactcttaccaaaaaccttaaggcaataggtttatgggt 5542715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 6422222 - 6422178
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| ||||||||| | ||||||||||||| ||||||||||||||    
T  6422222 acaccacactcttacctaaaaccttaaggctatgggtttatgggt 6422178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 15511541 - 15511585
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| ||||||||| |||||| |||||| ||||||||||||||||    
T  15511541 acaccacactcttacccaaaatcttaagacaatgggtttatgggt 15511585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 35580494 - 35580530
Alignment:
Q  192 ctcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||||| ||||||||||||||||||| ||||||||||    
T  35580494 ctcttacccaaaaccttaaggcaatgagtttatgggt 35580530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 225
Target Start/End: Original strand, 36178320 - 36178356
Alignment:
Q  189 acactcttatccaaaaccttaaggcaatgggtttatg 225  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  36178320 acactcttacccaaaaccttaagacaatgggtttatg 36178356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 36784306 - 36784350
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| ||||| ||||||||||||||||| ||| ||||||||||||    
T  36784306 acacaacacttttatccaaaaccttaagacaaagggtttatgggt 36784350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 174 - 255
Target Start/End: Complemental strand, 197849 - 197770
Alignment:
Q  174 agagacgtaaacactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcctttgcttct 255  Q
    |||||| ||||||| ||||||||||||||   ||||||||||||| ||||||| |||||| | |||||||||||||| ||||    
T  197849 agagacttaaacaccacactcttatccaat--cttaaggcaatggatttatggattccctctcttatatatcctttgtttct 197770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0702 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 560 - 604
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||    
T  560 acaccacactcttacccaaaaccttaaggcaatgggtttatgggt 604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 5469 - 5425
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| |||||||||||||||| |||||||||||||||||||||||    
T  5469 acaccacactcttatccaaaatcttaaggcaatgggtttatgggt 5425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 17294689 - 17294645
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||    
T  17294689 acaccacactcttacccaaaaccttaaggcaatgggtttatgggt 17294645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 45494020 - 45494062
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgg 226  Q
    |||| ||||||||||||||||| ||||||||||||||||||||    
T  45494020 acaccacactcttatccaaaactttaaggcaatgggtttatgg 45494062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 29798311 - 29798270
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatg 225  Q
    |||| |||||||||||||| ||||||||||||||||||||||    
T  29798311 acaccacactcttatccaagaccttaaggcaatgggtttatg 29798270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 228
Target Start/End: Original strand, 44290511 - 44290548
Alignment:
Q  191 actcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  44290511 actcttacccaaaaccttaaggcaatgggtttatgggt 44290548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 5320011 - 5320055
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||||||||||||| ||||||||||||||| ||| ||||||||||    
T  5320011 acactacactcttacccaaaaccttaaggctatgagtttatgggt 5320055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 26661568 - 26661612
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| ||||||||| ||||||||||||||||||| ||||||||||    
T  26661568 acaccacactcttacccaaaaccttaaggcaatgagtttatgggt 26661612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 26661944 - 26661988
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| ||||||||| |||||||||||||||||| |||||||||||    
T  26661944 acaccacactcttacccaaaaccttaaggcaatcggtttatgggt 26661988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 34365037 - 34364993
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| ||||||||| ||||||||||||||| ||||||||||||||    
T  34365037 acaccacactcttacccaaaaccttaaggctatgggtttatgggt 34364993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 228
Target Start/End: Original strand, 22077161 - 22077200
Alignment:
Q  189 acactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    ||||||||||||||||||||| ||||||| ||||||||||    
T  22077161 acactcttatccaaaaccttagggcaatgagtttatgggt 22077200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 228
Target Start/End: Original strand, 32168749 - 32168788
Alignment:
Q  189 acactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    ||||||||| ||||||||| ||||||||||||||||||||    
T  32168749 acactcttacccaaaacctcaaggcaatgggtttatgggt 32168788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 37556223 - 37556181
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgg 226  Q
    |||| ||||||||| ||||||||||||||| ||||||||||||    
T  37556223 acaccacactcttacccaaaaccttaaggctatgggtttatgg 37556181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 38804401 - 38804443
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgg 226  Q
    |||||||||||||| ||||||||||||||  ||||||||||||    
T  38804401 acactacactcttacccaaaaccttaaggttatgggtttatgg 38804443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 41759595 - 41759553
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgg 226  Q
    |||| ||||||||| |||||||||||||||||||| |||||||    
T  41759595 acaccacactcttacccaaaaccttaaggcaatggatttatgg 41759553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 3550832 - 3550791
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatg 225  Q
    |||| ||||||||| ||||||| |||||||||||||||||||    
T  3550832 acaccacactcttacccaaaactttaaggcaatgggtttatg 3550791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 228
Target Start/End: Original strand, 44290886 - 44290915
Alignment:
Q  199 ccaaaaccttaaggcaatgggtttatgggt 228  Q
    ||||||||||||||||||||||||||||||    
T  44290886 ccaaaaccttaaggcaatgggtttatgggt 44290915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 14318979 - 14318935
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| ||||||||| |||||||||||||||||| | |||||||||    
T  14318979 acaccacactcttacccaaaaccttaaggcaatagatttatgggt 14318935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 225
Target Start/End: Original strand, 19283506 - 19283542
Alignment:
Q  189 acactcttatccaaaaccttaaggcaatgggtttatg 225  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  19283506 acactcttatccaaaaccttaaggcgatgagtttatg 19283542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 230
Target Start/End: Original strand, 30630690 - 30630730
Alignment:
Q  190 cactcttatccaaaaccttaaggcaatgggtttatgggttc 230  Q
    |||||||| ||||||| ||||||||||| ||||||||||||    
T  30630690 cactcttacccaaaactttaaggcaatgtgtttatgggttc 30630730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 32594762 - 32594806
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| ||||||||| ||||||||||||| ||||| ||||||||||    
T  32594762 acaccacactcttacccaaaaccttaagacaatgagtttatgggt 32594806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 230
Target Start/End: Complemental strand, 34649544 - 34649504
Alignment:
Q  190 cactcttatccaaaaccttaaggcaatgggtttatgggttc 230  Q
    |||||||| |||||||||||||||| | |||||||||||||    
T  34649544 cactcttacccaaaaccttaaggcattaggtttatgggttc 34649504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 39066246 - 39066290
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| ||||||||||||||||||||||| |||||  |||||||||    
T  39066246 acaccacactcttatccaaaaccttaagacaatgattttatgggt 39066290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 41157103 - 41157059
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| ||||||||| |||||||||||| |||||| ||||||||||    
T  41157103 acaccacactcttacccaaaaccttaaagcaatgagtttatgggt 41157059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 41157487 - 41157443
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| |||||||||  |||||||| ||||||||||||||||||||    
T  41157487 acaccacactcttactcaaaacctaaaggcaatgggtttatgggt 41157443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 44043818 - 44043862
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| ||||||||| |||||| |||||| ||||||||||||||||    
T  44043818 acaccacactcttacccaaaatcttaagacaatgggtttatgggt 44043862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 228
Target Start/End: Original strand, 3038341 - 3038380
Alignment:
Q  189 acactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  3038341 acactcttacccaaaaccttaaggcaatgggtttatgggt 3038380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 30441197 - 30441154
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatggg 227  Q
    |||| ||||||||| |||||||||||||||||||||||||||||    
T  30441197 acaccacactcttacccaaaaccttaaggcaatgggtttatggg 30441154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 147932 - 147887
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggtt 229  Q
    |||| ||||||||| |||||||||||||||||| ||||||||||||    
T  147932 acaccacactcttacccaaaaccttaaggcaataggtttatgggtt 147887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 5915979 - 5915935
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| ||||||||| ||||||||||||||||||| ||||||||||    
T  5915979 acaccacactcttacccaaaaccttaaggcaatgagtttatgggt 5915935  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 9483233 - 9483277
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| ||||||||| ||||||||||||| ||||||||||||||||    
T  9483233 acaccacactcttacccaaaaccttaagacaatgggtttatgggt 9483277  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 230
Target Start/End: Original strand, 12156694 - 12156750
Alignment:
Q  174 agagacgtaaacactacactcttatccaaaaccttaaggcaatgggtttatgggttc 230  Q
    |||||| ||||||  ||||||||| ||||||||||||| ||||||||||||| ||||    
T  12156694 agagacttaaacatcacactcttacccaaaaccttaagacaatgggtttatgagttc 12156750  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 20870619 - 20870663
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| |||||||||||||||| ||||||||| |||||||||||||    
T  20870619 acaccacactcttatccaaaatcttaaggcagtgggtttatgggt 20870663  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 30359383 - 30359339
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| ||||||||| ||||||||||||||| ||||||||||||||    
T  30359383 acaccacactcttacccaaaaccttaaggctatgggtttatgggt 30359339  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 224
Target Start/End: Original strand, 32640583 - 32640618
Alignment:
Q  189 acactcttatccaaaaccttaaggcaatgggtttat 224  Q
    ||||||||| ||||||||||||||||||||||||||    
T  32640583 acactcttacccaaaaccttaaggcaatgggtttat 32640618  T

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Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 228
Target Start/End: Complemental strand, 40518178 - 40518139
Alignment:
Q  189 acactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    ||||||||| |||||||||||||||| |||||||||||||    
T  40518178 acactcttacccaaaaccttaaggcattgggtttatgggt 40518139  T

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Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 230
Target Start/End: Complemental strand, 6651606 - 6651560
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggttc 230  Q
    |||| ||||||||| |||||||||||||||||||  |||||||||||    
T  6651606 acaccacactcttacccaaaaccttaaggcaatgaatttatgggttc 6651560  T

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Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 3669799 - 3669758
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatg 225  Q
    |||| ||||||||| ||||||||||||||||||| |||||||    
T  3669799 acaccacactcttacccaaaaccttaaggcaatgagtttatg 3669758  T

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Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 34834988 - 34834947
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatg 225  Q
    |||| ||||||||| ||||||||||||||||||| |||||||    
T  34834988 acaccacactcttacccaaaaccttaaggcaatgagtttatg 34834947  T

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Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 3670172 - 3670128
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| ||||||||| |||||||||||||| ||| |||||||||||    
T  3670172 acaccacactcttacccaaaaccttaaggaaataggtttatgggt 3670128  T

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Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 225
Target Start/End: Complemental strand, 9507889 - 9507853
Alignment:
Q  189 acactcttatccaaaaccttaaggcaatgggtttatg 225  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  9507889 acactcttacccaaaaccttaaggtaatgggtttatg 9507853  T

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Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 18371707 - 18371750
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| ||||||||| ||||||||||||||| ||||||||||||||    
T  18371707 acaccacactcttacccaaaaccttaaggc-atgggtttatgggt 18371750  T

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Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 226
Target Start/End: Original strand, 18372038 - 18372082
Alignment:
Q  182 aaacactacactcttatccaaaaccttaaggcaatgggtttatgg 226  Q
    |||||| ||||||||| |||||||||||| |||||| ||||||||    
T  18372038 aaacaccacactcttacccaaaaccttaaagcaatgagtttatgg 18372082  T

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Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 229
Target Start/End: Original strand, 18829893 - 18829933
Alignment:
Q  189 acactcttatccaaaaccttaaggcaatgggtttatgggtt 229  Q
    |||||||||||||||| | ||||||||||||||||| ||||    
T  18829893 acactcttatccaaaatcctaaggcaatgggtttataggtt 18829933  T

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Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 33113413 - 33113457
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| ||||||||| |||||| |||||||||||| ||||||||||    
T  33113413 acaccacactcttacccaaaatcttaaggcaatgagtttatgggt 33113457  T

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Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 34835321 - 34835277
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| ||||||||| ||||||| ||||||||||| ||||||||||    
T  34835321 acaccacactcttacccaaaactttaaggcaatgagtttatgggt 34835277  T

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Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 34835587 - 34835543
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| ||||||||| ||||||| ||||||||||| ||||||||||    
T  34835587 acaccacactcttacccaaaactttaaggcaatgagtttatgggt 34835543  T

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Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 34835853 - 34835809
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| ||||||||| ||||||| ||||||||||| ||||||||||    
T  34835853 acaccacactcttacccaaaactttaaggcaatgagtttatgggt 34835809  T

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Target: scaffold0391 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 1737 - 1781
Alignment:
Q  184 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 228  Q
    |||| ||||||||| | ||||||||||||||||||||||||||||    
T  1737 acaccacactcttaccaaaaaccttaaggcaatgggtttatgggt 1781  T

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Target: scaffold0391; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 225
Target Start/End: Original strand, 1159 - 1193
Alignment:
Q  191 actcttatccaaaaccttaaggcaatgggtttatg 225  Q
    ||||||| |||||||||||||||||||||||||||    
T  1159 actcttacccaaaaccttaaggcaatgggtttatg 1193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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