View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19499_low_24 (Length: 258)
Name: NF19499_low_24
Description: NF19499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19499_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 86 - 237
Target Start/End: Complemental strand, 41695719 - 41695568
Alignment:
| Q |
86 |
acaaaaagttgaatgcatatttgattggaaggcttggtgtgacatatacattagaggccactcattttctataaattaaattaaagcatgaaaatgtaca |
185 |
Q |
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| T |
41695719 |
acaaaaagcagaatacatatttgattggaaggcttagcgtgacagatatattagatgtcactcattttctataaattaaattataacatgaaaatgtata |
41695620 |
T |
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| Q |
186 |
ttatatatgtgaaatgttattttgttatcttattaacagtgaaattgtttaa |
237 |
Q |
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| T |
41695619 |
ttatatatgtgaaatgttattgtgttatcttattaatagtgaaattgtttaa |
41695568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 86 - 178
Target Start/End: Complemental strand, 41698134 - 41698042
Alignment:
| Q |
86 |
acaaaaagttgaatgcatatttgattggaaggcttggtgtgacatatacattagaggccactcattttctataaattaaattaaagcatgaaa |
178 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
41698134 |
acaaaaagttgaatgcatatttgattggaaggcttgatgtgacatatacattagaggccactcatttactataaattaaattaaagcatgaaa |
41698042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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