View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19499_low_3 (Length: 474)

Name: NF19499_low_3
Description: NF19499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19499_low_3
NF19499_low_3
[»] chr2 (5 HSPs)
chr2 (13-458)||(30397367-30397812)
chr2 (308-458)||(42117372-42117523)
chr2 (30-113)||(43525143-43525226)
chr2 (70-116)||(4113411-4113457)
chr2 (70-112)||(29754084-29754126)
[»] chr4 (3 HSPs)
chr4 (302-458)||(10426972-10427128)
chr4 (30-113)||(14461458-14461541)
chr4 (30-105)||(2665023-2665098)
[»] chr3 (8 HSPs)
chr3 (259-458)||(24671488-24671682)
chr3 (310-452)||(4578791-4578933)
chr3 (264-425)||(27630611-27630773)
chr3 (288-458)||(34489734-34489904)
chr3 (298-458)||(34523198-34523358)
chr3 (30-113)||(22509823-22509906)
chr3 (322-434)||(34470116-34470228)
chr3 (30-117)||(39621832-39621919)
[»] scaffold0074 (2 HSPs)
scaffold0074 (303-458)||(27688-27843)
scaffold0074 (259-428)||(29508-29672)
[»] chr7 (5 HSPs)
chr7 (258-458)||(2323761-2323962)
chr7 (311-458)||(16184100-16184247)
chr7 (259-428)||(8140457-8140627)
chr7 (30-113)||(33531949-33532032)
chr7 (30-113)||(41596537-41596620)
[»] chr6 (3 HSPs)
chr6 (302-458)||(18967576-18967732)
chr6 (334-435)||(6174702-6174804)
chr6 (255-458)||(23015000-23015204)
[»] chr1 (2 HSPs)
chr1 (257-457)||(46190885-46191078)
chr1 (355-458)||(4129859-4129962)
[»] chr8 (1 HSPs)
chr8 (30-113)||(12868549-12868632)
[»] chr5 (2 HSPs)
chr5 (30-113)||(14009387-14009470)
chr5 (30-113)||(23121220-23121303)
[»] scaffold0129 (1 HSPs)
scaffold0129 (21-190)||(7765-7943)


Alignment Details
Target: chr2 (Bit Score: 414; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 13 - 458
Target Start/End: Complemental strand, 30397812 - 30397367
Alignment:
Q  13 aatatctaagttgtaattgtagaaactgaaagagtcgtgataagacgaagtggtttatcaatcaaaaagtaaattttattcatcttagttgcaatcaaac 112  Q
    |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30397812 aatatctaagttgtgattgtagaaactggaagagtcgtgataagacgaagtggtttatcaatcaaaaagtaaattttattcatcttagttgcaatcaaac 30397713  T
Q  113 atgagtattattgttgataaatttattgaacttgattctttatggcatcaccaatgaattgctatagttgataacacaggttatcattatctttttcatt 212  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30397712 atgagtattattgttgataaattttttgaacttgattctttatggcatcaccaatgaattgctatagttgataacacaggttatcattatctttttcatt 30397613  T
Q  213 gaaattcatgggatagcatttttagaaaaagagtgtaaatagtatttgtgaatgatatggactcaagttgtgataaaacccaagcttatgaatgaaattg 312  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30397612 gaaattcatgggatagcatttttagaaaaagagtgcaaatagtatttgtgaatgatatggactcaagttgtgataaaacccaagcttatgaatgaaattg 30397513  T
Q  313 gcccaaattatgatccaaatccaatattgtgattgctaaagccacttttgtagcaagatacatgttcagggtgcatgtaagacaagttgcatttcgcatg 412  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  30397512 gcccaaattatgatccaaatccaatattgtgattgctaaaaccacttttgtagcaagatacatgttcatggtgcatgtaagataagttgcatttcgcatg 30397413  T
Q  413 taatgcatagtggcaaaatggatggttacatatattgacaagttgc 458  Q
    |||||||||||||||||||| |||||||||||||||||||||||||    
T  30397412 taatgcatagtggcaaaatgaatggttacatatattgacaagttgc 30397367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 308 - 458
Target Start/End: Original strand, 42117372 - 42117523
Alignment:
Q  308 aattggcccaaattatgatccaaatccaatattgtgattgctaaagccacttttgtagcaagatacatgttcagggtgcatgtaagacaagttgcatttc 407  Q
    ||||| || |||| |||||||||| |||||||| || ||| |||||||||||||||| ||||| |||||| || |||||| ||||||||| |||||||||    
T  42117372 aattgccctaaatgatgatccaaacccaatattatgtttggtaaagccacttttgtaacaagacacatgtccatggtgcaggtaagacaaattgcatttc 42117471  T
Q  408 gc-atgtaatgcatagtggcaaaatggatggttacatatattgacaagttgc 458  Q
     | ||||||||||  |||||||| ||||| ||| |||  ||||| |||||||    
T  42117472 tcaatgtaatgcaaggtggcaaagtggatagttgcatgcattgataagttgc 42117523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 30 - 113
Target Start/End: Complemental strand, 43525226 - 43525143
Alignment:
Q  30 tgtagaaactgaaagagtcgtgataagacgaagtggtttatcaatcaaaaagtaaattttattcatcttagttgcaatcaaaca 113  Q
    ||||||||||| ||||||| ||||||| || ||| || |||||||||| ||||||||||||||| ||| |||||||| ||||||    
T  43525226 tgtagaaactggaagagtcatgataaggcggagtagtctatcaatcaagaagtaaattttattcctctcagttgcaaccaaaca 43525143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 70 - 116
Target Start/End: Complemental strand, 4113457 - 4113411
Alignment:
Q  70 tcaatcaaaaagtaaattttattcatcttagttgcaatcaaacatga 116  Q
    |||||||||||||||||||||||||| |||||| ||| |||||||||    
T  4113457 tcaatcaaaaagtaaattttattcatgttagttacaaccaaacatga 4113411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 112
Target Start/End: Complemental strand, 29754126 - 29754084
Alignment:
Q  70 tcaatcaaaaagtaaattttattcatcttagttgcaatcaaac 112  Q
    ||||||||||||||||||| ||||||||||||| ||| |||||    
T  29754126 tcaatcaaaaagtaaatttgattcatcttagttacaaccaaac 29754084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 97; Significance: 2e-47; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 302 - 458
Target Start/End: Original strand, 10426972 - 10427128
Alignment:
Q  302 gaatgaaattggcccaaattatgatccaaatccaatattgtgattgctaaagccacttttgtagcaagatacatgttcagggtgcatgtaagacaagttg 401  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||| ||| |||||||    
T  10426972 gaatggaattggcccaaatgatgatccaaatccaatattgtgattggtaaagccacttttgtagcaagacacatgttcatggtgcatgaaaggcaagttg 10427071  T
Q  402 catttcgcatgtaatgcatagtggcaaaatggatggttacatatattgacaagttgc 458  Q
    || ||| |||||||||||| |||||||| ||||||||| |||  ||||||| |||||    
T  10427072 cacttctcatgtaatgcatggtggcaaagtggatggttgcatgcattgacatgttgc 10427128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 30 - 113
Target Start/End: Complemental strand, 14461541 - 14461458
Alignment:
Q  30 tgtagaaactgaaagagtcgtgataagacgaagtggtttatcaatcaaaaagtaaattttattcatcttagttgcaatcaaaca 113  Q
    ||||||||||| ||||||| ||||||| || ||| || |||||||||| ||||||||||||||| ||| |||||||| ||||||    
T  14461541 tgtagaaactggaagagtcatgataaggcggagtagtctatcaatcaagaagtaaattttattcctctaagttgcaaccaaaca 14461458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 105
Target Start/End: Original strand, 2665023 - 2665098
Alignment:
Q  30 tgtagaaactgaaagagtcgtgataagacgaagtggtttatcaatcaaaaagtaaattttattcatcttagttgca 105  Q
    ||||||||||| |||| || |||||||||| ||| || |||||||||| ||||||||||||||| ||| |||||||    
T  2665023 tgtagaaactggaagactcatgataagacggagtagtctatcaatcaagaagtaaattttattcctctcagttgca 2665098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 2e-44; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 259 - 458
Target Start/End: Complemental strand, 24671682 - 24671488
Alignment:
Q  259 tgtgaatgatatggactcaagttgtgataaaacccaagcttatgaatgaaattggcccaaattatgatccaaatccaatattgtgattgctaaagccact 358  Q
    |||||||||||||| |||||||| ||||     ||||||  | ||||| ||||||||||||| |||||||||  ||||||||||||||| ||||||||||    
T  24671682 tgtgaatgatatgggctcaagttatgat-----ccaagcccaagaatggaattggcccaaatgatgatccaagcccaatattgtgattggtaaagccact 24671588  T
Q  359 tttgtagcaagatacatgttcagggtgcatgtaagacaagttgcatttcgcatgtaatgcatagtggcaaaatggatggttacatatattgacaagttgc 458  Q
    |||||||||||| |||||| || |||||||| ||||||||||||| ||| |||||||||||| |||||||| ||||||||| |||  ||||||| |||||    
T  24671587 tttgtagcaagacacatgtccatggtgcatgaaagacaagttgcacttctcatgtaatgcatggtggcaaagtggatggttgcatgcattgacatgttgc 24671488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 310 - 452
Target Start/End: Original strand, 4578791 - 4578933
Alignment:
Q  310 ttggcccaaattatgatccaaatccaatattgtgattgctaaagccacttttgtagcaagatacatgttcagggtgcatgtaagacaagttgcatttcgc 409  Q
    ||||||||||| |||||||||  ||||||||||||||| |||||||||||||||||||||| ||||||  | |||||||| ||||||||||||| ||| |    
T  4578791 ttggcccaaatgatgatccaagcccaatattgtgattggtaaagccacttttgtagcaagacacatgtcgatggtgcatgaaagacaagttgcacttctc 4578890  T
Q  410 atgtaatgcatagtggcaaaatggatggttacatatattgaca 452  Q
    ||||||||||| |||||||| ||||||||| |||  |||||||    
T  4578891 atgtaatgcatggtggcaaagtggatggttgcatgcattgaca 4578933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 264 - 425
Target Start/End: Complemental strand, 27630773 - 27630611
Alignment:
Q  264 atgatatggactcaagttgtgataaaa-cccaagcttatgaatgaaattggcccaaattatgatccaaatccaatattgtgattgctaaagccacttttg 362  Q
    ||||||||| ||||| |||||||  || |||| | |||||||||||||| |||||||| |||||||||  |||||||||| | || |||||||| |||||    
T  27630773 atgatatgggctcaaattgtgatttaagcccatgattatgaatgaaatttgcccaaatgatgatccaagcccaatattgtaactggtaaagccaattttg 27630674  T
Q  363 tagcaagatacatgttcagggtgcatgtaagacaagttgcatttcgcatgtaatgcatagtgg 425  Q
    || |||||||||||| || |||||| ||||||||||||||||||  ||||||| ||| |||||    
T  27630673 taacaagatacatgtccaaggtgcaagtaagacaagttgcatttttcatgtaaggcaaagtgg 27630611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 288 - 458
Target Start/End: Complemental strand, 34489904 - 34489734
Alignment:
Q  288 aaacccaagcttatgaatgaaattggcccaaattatgatccaaatccaatattgtgattgctaaagccacttttgtagcaagatacatgttcagggtgca 387  Q
    ||||||| | |||||||||||||| || ||||| |||||||||  |||||||||| | |  |||||||||||||||| ||||| || ||| || ||||||    
T  34489904 aaacccatgattatgaatgaaatttgctcaaatgatgatccaatcccaatattgtaactcgtaaagccacttttgtaacaagacacgtgtccatggtgca 34489805  T
Q  388 tgtaagacaagttgcatttcgcatgtaatgcatagtggcaaaatggatggttacatatattgacaagttgc 458  Q
    |||||||||||||||||||  ||||||| | | ||||||||| ||||  ||| |||  |||||||||||||    
T  34489804 tgtaagacaagttgcatttttcatgtaaggaaaagtggcaaagtggacagttgcatgcattgacaagttgc 34489734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 298 - 458
Target Start/End: Complemental strand, 34523358 - 34523198
Alignment:
Q  298 ttatgaatgaaattggcccaaattatgatccaaatccaatattgtgattgctaaagccacttttgtagcaagatacatgttcagggtgcatgtaagacaa 397  Q
    ||||||||||||||  ||||||| ||| || ||   ||||||||| | || |||||||||||||||| || || || ||| || ||||||||||||||||    
T  34523358 ttatgaatgaaattttcccaaatgatgctcgaagctcaatattgtaactggtaaagccacttttgtaacaggacacctgtccaaggtgcatgtaagacaa 34523259  T
Q  398 gttgcatttcgcatgtaatgcatagtggcaaaatggatggttacatatattgacaagttgc 458  Q
    |||||||||  ||||||| ||| ||||||||| ||||  ||| |||  |||||||||||||    
T  34523258 gttgcatttttcatgtaaggcaaagtggcaaagtggacagttgcatgcattgacaagttgc 34523198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 22509823 - 22509906
Alignment:
Q  30 tgtagaaactgaaagagtcgtgataagacgaagtggtttatcaatcaaaaagtaaattttattcatcttagttgcaatcaaaca 113  Q
    |||||||| || ||||||| ||||||| || ||| || |||||||||| ||||||||||||||| ||| |||||||| ||||||    
T  22509823 tgtagaaattggaagagtcatgataaggcggagtagtctatcaatcaagaagtaaattttattcctctcagttgcaaccaaaca 22509906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 322 - 434
Target Start/End: Complemental strand, 34470228 - 34470116
Alignment:
Q  322 atgatccaaatccaatattgtgattgctaaagccacttttgtagcaagatacatgttcagggtgcatgtaagacaagttgcatttcgcatgtaatgcata 421  Q
    |||||| ||| |||||||| |||||| ||| |||||||||||| |  || |||||| || ||||||||||| |||||| ||||||  |||| || ||| |    
T  34470228 atgatcaaaacccaatattatgattggtaaggccacttttgtaacttgacacatgtacatggtgcatgtaacacaagtagcatttttcatgcaaagcaaa 34470129  T
Q  422 gtggcaaaatgga 434  Q
    |||||||| ||||    
T  34470128 gtggcaaagtgga 34470116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 117
Target Start/End: Complemental strand, 39621919 - 39621832
Alignment:
Q  30 tgtagaaactgaaagagtcgtgataagacgaagtggtttatcaatcaaaaagtaaattttattcatcttagttgcaatcaaacatgag 117  Q
    |||||||| || ||||||| ||||||| |  | | || |||||||||| ||||||||||||||  ||| |||||||| ||||||||||    
T  39621919 tgtagaaattggaagagtcatgataaggcagaatagtctatcaatcaagaagtaaattttattactctcagttgcaaccaaacatgag 39621832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 303 - 458
Target Start/End: Complemental strand, 27843 - 27688
Alignment:
Q  303 aatgaaattggcccaaattatgatccaaatccaatattgtgattgctaaagccacttttgtagcaagatacatgttcagggtgcatgtaagacaagttgc 402  Q
    |||| ||||||||||||| |||||||||  ||||||||||||||| |||||||||||||||||||||| |||||| || |||||||| ||||||||||||    
T  27843 aatggaattggcccaaatgatgatccaagcccaatattgtgattggtaaagccacttttgtagcaagacacatgtccatggtgcatgaaagacaagttgc 27744  T
Q  403 atttcgcatgtaatgcatagtggcaaaatggatggttacatatattgacaagttgc 458  Q
    | ||| |||||||||||| |||||||| |||||| || |||  ||||||| |||||    
T  27743 acttctcatgtaatgcatggtggcaaagtggatgcttgcatgcattgacatgttgc 27688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 259 - 428
Target Start/End: Complemental strand, 29672 - 29508
Alignment:
Q  259 tgtgaatgatatggactcaagttgtgataaaacccaagcttatgaatgaaattggcccaaattatgatccaaatccaatattgtgattgctaaagccact 358  Q
    ||||||||||| || |||||||||||||     ||||||  | ||||  ||||||||||||| |||||||||  ||||||||| ||||| ||||||||||    
T  29672 tgtgaatgatacgggctcaagttgtgat-----ccaagcccaagaatcgaattggcccaaatgatgatccaagcccaatattgcgattggtaaagccact 29578  T
Q  359 tttgtagcaagatacatgttcagggtgcatgtaagacaagttgcatttcgcatgtaatgcatagtggcaa 428  Q
    |||||||||||| ||||||  | ||||||||||||||||||||||||||  ||||||||||| |||||||    
T  29577 tttgtagcaagacacatgtctatggtgcatgtaagacaagttgcatttcttatgtaatgcatggtggcaa 29508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 2e-38; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 258 - 458
Target Start/End: Complemental strand, 2323962 - 2323761
Alignment:
Q  258 ttgtgaatgatatggactcaagttgtgataaaa-cccaagcttatgaatgaaattggcccaaattatgatccaaatccaatattgtgattgctaaagcca 356  Q
    ||||||||||||||| |||||||| | ||  || ||||||  ||| |||| ||||||||||| | |||||||||  ||| ||||||||||  ||||||||    
T  2323962 ttgtgaatgatatgggctcaagttattatccaagcccaagactataaatggaattggcccaagtgatgatccaagcccactattgtgattagtaaagcca 2323863  T
Q  357 cttttgtagcaagatacatgttcagggtgcatgtaagacaagttgcatttcgcatgtaatgcatagtggcaaaatggatggttacatatattgacaagtt 456  Q
    |||||||||||||| | |||| || ||||||||||||||||||||||||||  | ||||||||| |||||||| ||||||||| |||| ||||||| |||    
T  2323862 cttttgtagcaagacaaatgtccatggtgcatgtaagacaagttgcatttctgacgtaatgcatggtggcaaagtggatggttgcatacattgacatgtt 2323763  T
Q  457 gc 458  Q
    ||    
T  2323762 gc 2323761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 311 - 458
Target Start/End: Complemental strand, 16184247 - 16184100
Alignment:
Q  311 tggcccaaattatgatccaaatccaatattgtgattgctaaagccacttttgtagcaagatacatgttcagggtgcatgtaagacaagttgcatttcgca 410  Q
    |||||||||| |||||||||  ||||||||||||||| |||| ||||||||| ||||||| |||||| || |||||||| ||||||||||||| |||  |    
T  16184247 tggcccaaatgatgatccaagcccaatattgtgattggtaaaaccacttttgcagcaagacacatgtacatggtgcatgaaagacaagttgcacttctta 16184148  T
Q  411 tgtaatgcatagtggcaaaatggatggttacatatattgacaagttgc 458  Q
    |||||||||| |||||||| || |||||| |||  ||||||| |||||    
T  16184147 tgtaatgcatggtggcaaagtgaatggttgcatgcattgacatgttgc 16184100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 259 - 428
Target Start/End: Complemental strand, 8140627 - 8140457
Alignment:
Q  259 tgtgaatgatatggactcaagttgtgataaaa-cccaagcttatgaatgaaattggcccaaattatgatccaaatccaatattgtgattgctaaagccac 357  Q
    |||||||||||||| |||||  ||||||  || |||||| ||||||| | |||  | |||||| || ||||||  ||||||||||||||| |||||||||    
T  8140627 tgtgaatgatatgggctcaaactgtgattcaagcccaagattatgaagggaatatgtccaaatgataatccaatcccaatattgtgattggtaaagccac 8140528  T
Q  358 ttttgtagcaagatacatgttcagggtgcatgtaagacaagttgcatttcgcatgtaatgcatagtggcaa 428  Q
    ||||||||||||| |||||| || |||||||| ||||||||||||||| | |||||||||||  |||||||    
T  8140527 ttttgtagcaagacacatgtccatggtgcatgcaagacaagttgcattactcatgtaatgcaaggtggcaa 8140457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 30 - 113
Target Start/End: Complemental strand, 33532032 - 33531949
Alignment:
Q  30 tgtagaaactgaaagagtcgtgataagacgaagtggtttatcaatcaaaaagtaaattttattcatcttagttgcaatcaaaca 113  Q
    ||||||||||| ||||||| ||||||| |||||| || |||||||||| ||||||||||||||| ||| |||||||| ||||||    
T  33532032 tgtagaaactggaagagtcatgataaggcgaagtagtctatcaatcaagaagtaaattttattcctctcagttgcaaccaaaca 33531949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 113
Target Start/End: Complemental strand, 41596620 - 41596537
Alignment:
Q  30 tgtagaaactgaaagagtcgtgataagacgaagtggtttatcaatcaaaaagtaaattttattcatcttagttgcaatcaaaca 113  Q
    ||||||||||| ||| ||| ||||||| || ||| || |||||||||| ||||||||||||||| ||| |||||||| ||||||    
T  41596620 tgtagaaactggaagggtcatgataaggcggagtagtctatcaatcaagaagtaaattttattcctctcagttgcaaccaaaca 41596537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 6e-38; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 302 - 458
Target Start/End: Original strand, 18967576 - 18967732
Alignment:
Q  302 gaatgaaattggcccaaattatgatccaaatccaatattgtgattgctaaagccacttttgtagcaagatacatgttcagggtgcatgtaagacaagttg 401  Q
    ||||| ||||||||||||| |||||||||  ||||||||||||||| ||||| |||||||||||||||  |||||| || |||||||| |||||||||||    
T  18967576 gaatggaattggcccaaatgatgatccaagcccaatattgtgattggtaaagacacttttgtagcaaggcacatgtccatggtgcatgaaagacaagttg 18967675  T
Q  402 catttcgcatgtaatgcatagtggcaaaatggatggttacatatattgacaagttgc 458  Q
    || ||| |||||||||||| |||||||| ||||||||| |||  ||||||| |||||    
T  18967676 cacttctcatgtaatgcatggtggcaaagtggatggttgcatgcattgacatgttgc 18967732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 334 - 435
Target Start/End: Complemental strand, 6174804 - 6174702
Alignment:
Q  334 caatattgtgattgctaaagccacttttg-tagcaagatacatgttcagggtgcatgtaagacaagttgcatttcgcatgtaatgcatagtggcaaaatg 432  Q
    |||||||||||||| |||||||| ||||  || ||| ||||||||| | |||||||||||   |||||||||||| ||||||||||| ||||| |||| |    
T  6174804 caatattgtgattgataaagccattttttataacaaaatacatgttaatggtgcatgtaaattaagttgcatttctcatgtaatgcaaagtggtaaaacg 6174705  T
Q  433 gat 435  Q
    |||    
T  6174704 gat 6174702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 255 - 458
Target Start/End: Complemental strand, 23015204 - 23015000
Alignment:
Q  255 tatttgtgaatgatatggactcaagttgtgataaaa-cccaagcttatgaatgaaattggcccaaattatgatccaaatccaatattgtgattgctaaag 353  Q
    |||||||||||||||| |||  |||||  |||  || |||||| || | ||||||| || | ||||| ||| ||||| |||  ||||||||||  ||||     
T  23015204 tatttgtgaatgatattgacgtaagttccgatccaagcccaagattctaaatgaaactgactcaaatgatggtccaagtccggtattgtgattagtaaaa 23015105  T
Q  354 ccacttttgtagcaagatacatgttcagggtgcatgtaagacaagttgcatttcgcatgtaatgcatagtggcaaaatggatggttacatatattgacaa 453  Q
    |||||| |||| ||||| || ||| || ||||||||||||||||||| ||||||  |||| ||||| ||||| | |  |||| ||| |||  ||||||||    
T  23015104 ccacttatgtaacaagaaacgtgtccatggtgcatgtaagacaagttacatttctaatgttatgcaaagtggtatataggatagttgcatgcattgacaa 23015005  T
Q  454 gttgc 458  Q
    |||||    
T  23015004 gttgc 23015000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 9e-34; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 257 - 457
Target Start/End: Original strand, 46190885 - 46191078
Alignment:
Q  257 tttgtgaatgatatggactcaagttgtgataaaacccaagcttatgaatgaaattggcccaaattatgatccaaatccaatattgtgattgctaaagcca 356  Q
    |||||||||||||||| |||||||| ||||     ||||||  | ||||| ||||| ||||||| ||||| |||  |||||||||  |||| ||||||||    
T  46190885 tttgtgaatgatatgggctcaagttatgat-----ccaagcccaagaatggaattgacccaaatgatgattcaagcccaatattg--attggtaaagcca 46190977  T
Q  357 cttttgtagcaagatacatgttcagggtgcatgtaagacaagttgcatttcgcatgtaatgcatagtggcaaaatggatggttacatatattgacaagtt 456  Q
    |||||||||||||| |||||| || |||||||| ||||||||||||| ||| |||||||||||| |||||||| ||||||||| |||  ||||||| |||    
T  46190978 cttttgtagcaagacacatgtccatggtgcatgaaagacaagttgcacttctcatgtaatgcatggtggcaaagtggatggttgcatgcattgacatgtt 46191077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 355 - 458
Target Start/End: Original strand, 4129859 - 4129962
Alignment:
Q  355 cacttttgtagcaagatacatgttcagggtgcatgtaagacaagttgcatttcgcatgtaatgcatagtggcaaaatggatggttacatatattgacaag 454  Q
    |||||||||||||||| |||||| || |||||||| |||| |||||||| ||| |||||||||||| |||||||| ||||||||| |||  ||||||| |    
T  4129859 cacttttgtagcaagacacatgtccatggtgcatgaaagaaaagttgcacttctcatgtaatgcatggtggcaaagtggatggttgcatgcattgacatg 4129958  T
Q  455 ttgc 458  Q
    ||||    
T  4129959 ttgc 4129962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 12868549 - 12868632
Alignment:
Q  30 tgtagaaactgaaagagtcgtgataagacgaagtggtttatcaatcaaaaagtaaattttattcatcttagttgcaatcaaaca 113  Q
    ||||||||||| ||||||| ||||||| || ||| || |||||||||| ||||||||||||||| ||| |||||||| ||||||    
T  12868549 tgtagaaactggaagagtcatgataaggcggagtagtctatcaatcaagaagtaaattttattcctctcagttgcaaccaaaca 12868632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 30 - 113
Target Start/End: Complemental strand, 14009470 - 14009387
Alignment:
Q  30 tgtagaaactgaaagagtcgtgataagacgaagtggtttatcaatcaaaaagtaaattttattcatcttagttgcaatcaaaca 113  Q
    ||||||||||| ||||||| ||||||| || ||| || |||||||||| ||||||||||||||| ||| |||||||| ||||||    
T  14009470 tgtagaaactggaagagtcatgataaggcggagtagtctatcaatcaagaagtaaattttattcctctcagttgcaaccaaaca 14009387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 23121220 - 23121303
Alignment:
Q  30 tgtagaaactgaaagagtcgtgataagacgaagtggtttatcaatcaaaaagtaaattttattcatcttagttgcaatcaaaca 113  Q
    ||||||||||| ||||||| ||||||| || ||| || |||||||||| ||||||||||||||| ||| |||||||| ||||||    
T  23121220 tgtagaaactggaagagtcatgataaggcggagtagtctatcaatcaagaagtaaattttattcctctcagttgcaaccaaaca 23121303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 190
Target Start/End: Original strand, 7765 - 7943
Alignment:
Q  21 agttgtaattgtagaaactgaaagagtcgtgataagacgaagtggtttatcaatcaaaaagtaaattttattcatcttagttgcaatcaaacatgagtat 120  Q
    |||||| | |||||||| || ||||||| ||||||| || ||| || |||||||||| ||||||||||||||| ||| |||||||| |||||| ||| ||    
T  7765 agttgtgactgtagaaattggaagagtcatgataaggcggagtagtctatcaatcaagaagtaaattttattcctctcagttgcaaccaaacacgagcat 7864  T
Q  121 tatt--------gttgataaatttattgaacttgattctttat-ggcatcaccaatgaattgctatagttgataacaca 190  Q
     |||        |||||||||||  |  ||||||||||||| | || |||| ||||||||||||  |||||||||||||    
T  7865 aattcttgaatagttgataaattcttcaaacttgattctttgtgggtatcaacaatgaattgctcgagttgataacaca 7943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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