View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19499_low_32 (Length: 213)
Name: NF19499_low_32
Description: NF19499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19499_low_32 |
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| [»] scaffold0016 (2 HSPs) |
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| [»] scaffold0272 (1 HSPs) |
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| [»] scaffold0076 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 105; Significance: 1e-52; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 14 - 183
Target Start/End: Complemental strand, 21151242 - 21151077
Alignment:
| Q |
14 |
aagaatatccatattactatagactaactccaaaatcctgttaaatctatatgtgagttcatattatagcattctccattgataagcactcaatatatat |
113 |
Q |
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||||| |||||| |||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||| ||||||| |
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| T |
21151242 |
aagaaaatccattttactatagactaactccaaaatcctgttaaatcaataaattagttcatattatagcattctccattgataagccctcaataa---- |
21151147 |
T |
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| Q |
114 |
cttgtggattagttttcgattcactaaaccaaacacaaatataggaactaaagaataaatacaaacatgc |
183 |
Q |
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||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
21151146 |
cttttgaattagttttcggttcactaaaccaaacacaaatataggaactaaagaataagtacaaacatgc |
21151077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 71 - 174
Target Start/End: Complemental strand, 21182292 - 21182192
Alignment:
| Q |
71 |
ttcatattatagcattctccattgataagcactcaatatatatcttgtggattagttttcgattcactaaaccaaacacaaatataggaactaaagaata |
170 |
Q |
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| T |
21182292 |
ttcatattctagctttctccattgataatcactcaata---attttgtggattaattttcgattcacaaaaccaaacacaaacataggaactaaagaata |
21182196 |
T |
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| Q |
171 |
aata |
174 |
Q |
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|||| |
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| T |
21182195 |
aata |
21182192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 80 - 174
Target Start/End: Complemental strand, 21315143 - 21315048
Alignment:
| Q |
80 |
tagcattctcc--attgataagcactcaatatatatcttgtggattagtttt-cgattcactaaa-ccaaacacaaatataggaactaaagaataaata |
174 |
Q |
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| T |
21315143 |
tagcattctcctcattgataagcactcaata---atcttgtggattaatttttctattcactaaaaccaaacacaaatattggaactaaagaataaata |
21315048 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 180
Target Start/End: Complemental strand, 21267586 - 21267478
Alignment:
| Q |
73 |
catattatagcattctccattgataagcactcaatatata-tcttgtggattagttttcgattcactaaaccaaacacaaatataggaactaaagaataa |
171 |
Q |
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|||||| ||| |||||| ||||||||||| ||| | ||| |||| ||||| | ||||||||| | |||||||||||||||||||||||| | ||||| | |
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| T |
21267586 |
catattctaggattctctattgataagcagtcactcaataatcttttggatcaattttcgatttagtaaaccaaacacaaatataggaaccatagaatta |
21267487 |
T |
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| Q |
172 |
atacaaaca |
180 |
Q |
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|||||||| |
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| T |
21267486 |
ttacaaaca |
21267478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 183
Target Start/End: Complemental strand, 21303687 - 21303655
Alignment:
| Q |
151 |
aatataggaactaaagaataaatacaaacatgc |
183 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
21303687 |
aataaaggaactaaagaataaatacaaacatgc |
21303655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 6e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 69 - 183
Target Start/End: Complemental strand, 11843906 - 11843796
Alignment:
| Q |
69 |
agttcatattatagcattctccattgataagcactcaatatatatcttgtggattagttttcgattcactaaaccaaacacaaatataggaactaaagaa |
168 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| |||||||| |||| |||| ||||||||||||||||||| |||||||||||||||||| |
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| T |
11843906 |
agttcatattatagcactctccattgataagcactcaata---atcttgtgcattaatttttgattcactaaaccaaacac-aatataggaactaaagaa |
11843811 |
T |
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| Q |
169 |
taaatacaaacatgc |
183 |
Q |
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| T |
11843810 |
taaatacaaacatgc |
11843796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 69 - 182
Target Start/End: Original strand, 71945 - 72055
Alignment:
| Q |
69 |
agttcatattatagcattctccattgataagcactcaatatatatcttgtggattagttttcgattcactaaaccaaacacaaatataggaactaaagaa |
168 |
Q |
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|||||||||| ||||||||||||||||| ||||||||| ||||||| ||||| |||||||||||| ||||||| ||||||| |||||||||||||| |
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| T |
71945 |
agttcatattcgtgcattctccattgataatcactcaata---atcttgttgattaattttcgattcaccaaaccaaccacaaatctaggaactaaagaa |
72041 |
T |
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| Q |
169 |
taaatacaaacatg |
182 |
Q |
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| |||| ||||||| |
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| T |
72042 |
tgaatagaaacatg |
72055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 73 - 106
Target Start/End: Original strand, 61683 - 61716
Alignment:
| Q |
73 |
catattatagcattctccattgataagcactcaa |
106 |
Q |
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|||||| ||||||||||||||||||||||||||| |
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| T |
61683 |
catattctagcattctccattgataagcactcaa |
61716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 69 - 182
Target Start/End: Complemental strand, 11455 - 11345
Alignment:
| Q |
69 |
agttcatattatagcattctccattgataagcactcaatatatatcttgtggattagttttcgattcactaaaccaaacacaaatataggaactaaagaa |
168 |
Q |
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|||||||||| ||||||||||||| ||| ||||||||| ||||||| ||||| |||||||||||| ||||||| ||||||| |||||||||||| | |
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| T |
11455 |
agttcatattcgtgcattctccattggtaatcactcaata---atcttgttgattaattttcgattcaccaaaccaaccacaaatctaggaactaaagta |
11359 |
T |
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| Q |
169 |
taaatacaaacatg |
182 |
Q |
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| |||| ||||||| |
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| T |
11358 |
tgaatagaaacatg |
11345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 154
Target Start/End: Complemental strand, 18325 - 18265
Alignment:
| Q |
91 |
attgataagcactcaatatatatcttgtggattagttttcgattcactaaaccaaacacaaata |
154 |
Q |
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|||||||||||||||||| |||||||||||| ||||||||||| |||||||||| ||||||| |
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| T |
18325 |
attgataagcactcaata---atcttgtggatttgttttcgattcgctaaaccaaatacaaata |
18265 |
T |
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