View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19499_low_4 (Length: 468)
Name: NF19499_low_4
Description: NF19499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19499_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 1 - 452
Target Start/End: Original strand, 8824381 - 8824832
Alignment:
| Q |
1 |
cactataggatgatcagcttaaggggagtgtataactatatatctatatatagctgtcttcaaaggccagaaatgattgatacagtttttgttcttttga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
8824381 |
cactataggatgatcagcttaaggggagtgtataactatatatctatatatagctgtcttcaaaggccagaaaggattgatacagtttttgttcttttga |
8824480 |
T |
|
| Q |
101 |
ggcaatttctctgaaaggctagtaagggttgctacaatttttccactttgaatccactcaaatgcagaaaaaagaatagtgaaattaagagaacaataat |
200 |
Q |
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|||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8824481 |
ggcaatttctctcaaaggctagttagggttgctacaatttttccactttgaatccactcaaatgcagaaaaaagaatagtgaaattaagagaacaataat |
8824580 |
T |
|
| Q |
201 |
acaagccaactactacttggggggcacatgatactgccctatgcattaactatgagccaggtctttatgtgcttgctattcaagtccacataacatgtaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8824581 |
acaagccaactactacttggggggcacatgatactgccctatgcattaactatgagccaggtctttatgtgcttgctattcaagtccacataacatgtaa |
8824680 |
T |
|
| Q |
301 |
aataaagttgaaataaatgcaaatctcagaagtaaatgagggatgcactatcacctcccaaccatacatatgtcnnnnnnnactataccaaacacataca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
8824681 |
aataaagttgaaataaatgcaaatctcagaagtaaatgagggatgcactatcacctcccaaccatacatatgtctttttttactataccaaacacataca |
8824780 |
T |
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| Q |
401 |
ataaatatggtccaatcgtttcctagcaaaaataaggacatgtacccttcat |
452 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8824781 |
ataaatatggtccaatcgtttcctagcaaaaataaggacatgtacccttcat |
8824832 |
T |
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