View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19499_low_6 (Length: 466)

Name: NF19499_low_6
Description: NF19499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19499_low_6
NF19499_low_6
[»] chr3 (22 HSPs)
chr3 (13-450)||(47889540-47889971)
chr3 (154-209)||(3178754-3178809)
chr3 (154-208)||(8950526-8950580)
chr3 (154-208)||(13856151-13856205)
chr3 (153-255)||(20382524-20382626)
chr3 (154-208)||(21853249-21853303)
chr3 (154-208)||(23467516-23467570)
chr3 (154-208)||(40845939-40845993)
chr3 (153-254)||(43347357-43347457)
chr3 (154-208)||(5391509-5391563)
chr3 (153-210)||(1781812-1781869)
chr3 (156-208)||(32352899-32352951)
chr3 (153-208)||(36539684-36539739)
chr3 (154-208)||(44994990-44995045)
chr3 (153-210)||(19649393-19649450)
chr3 (155-210)||(54546954-54547009)
chr3 (153-210)||(10839401-10839458)
chr3 (153-210)||(8926816-8926873)
chr3 (153-197)||(27642723-27642767)
chr3 (168-210)||(22845398-22845440)
chr3 (153-247)||(48206868-48206960)
chr3 (168-208)||(791866-791906)
[»] chr2 (16 HSPs)
chr2 (153-210)||(6318479-6318536)
chr2 (153-208)||(40277309-40277364)
chr2 (154-208)||(14186460-14186514)
chr2 (154-208)||(14942066-14942120)
chr2 (154-208)||(42769780-42769834)
chr2 (154-208)||(19181600-19181654)
chr2 (154-208)||(29846494-29846548)
chr2 (156-210)||(1387312-1387366)
chr2 (156-210)||(33009723-33009777)
chr2 (153-208)||(3956624-3956679)
chr2 (153-210)||(14539725-14539782)
chr2 (168-210)||(43139797-43139839)
chr2 (153-210)||(41674727-41674784)
chr2 (153-210)||(2888091-2888148)
chr2 (168-208)||(3597903-3597943)
chr2 (280-308)||(3956522-3956550)
[»] chr6 (12 HSPs)
chr6 (154-208)||(14309820-14309874)
chr6 (154-208)||(1727955-1728009)
chr6 (154-208)||(9231876-9231930)
chr6 (154-208)||(13627592-13627646)
chr6 (154-208)||(24694673-24694727)
chr6 (153-255)||(13103139-13103241)
chr6 (153-208)||(28750671-28750726)
chr6 (154-204)||(24497596-24497646)
chr6 (153-210)||(34103735-34103792)
chr6 (166-210)||(11212721-11212765)
chr6 (168-209)||(8412717-8412758)
chr6 (153-210)||(27863749-27863806)
[»] chr5 (20 HSPs)
chr5 (153-255)||(10081150-10081252)
chr5 (153-249)||(8456984-8457079)
chr5 (153-255)||(11856300-11856402)
chr5 (154-208)||(23218537-23218591)
chr5 (154-208)||(37169055-37169109)
chr5 (154-208)||(38397650-38397704)
chr5 (157-210)||(9738008-9738061)
chr5 (154-210)||(39862509-39862565)
chr5 (154-208)||(6257432-6257486)
chr5 (153-255)||(614413-614515)
chr5 (154-208)||(16618592-16618646)
chr5 (156-208)||(15631665-15631718)
chr5 (153-210)||(42119672-42119729)
chr5 (153-209)||(29790240-29790296)
chr5 (153-249)||(25560348-25560443)
chr5 (153-210)||(27916190-27916247)
chr5 (153-210)||(36769095-36769152)
chr5 (153-208)||(33271291-33271346)
chr5 (168-210)||(19322058-19322100)
chr5 (153-210)||(10115210-10115267)
[»] chr4 (25 HSPs)
chr4 (154-208)||(52632570-52632624)
chr4 (154-208)||(1535823-1535877)
chr4 (154-208)||(36012207-36012261)
chr4 (154-208)||(49284409-49284463)
chr4 (153-249)||(17888571-17888666)
chr4 (154-208)||(34241045-34241099)
chr4 (154-208)||(46583563-46583617)
chr4 (153-210)||(31377440-31377497)
chr4 (153-209)||(11054507-11054563)
chr4 (154-208)||(16338235-16338289)
chr4 (154-208)||(25954802-25954856)
chr4 (153-210)||(9742554-9742611)
chr4 (154-210)||(20818617-20818673)
chr4 (154-208)||(37801286-37801340)
chr4 (153-210)||(12792252-12792309)
chr4 (153-210)||(47084062-47084119)
chr4 (168-208)||(5780790-5780830)
chr4 (167-208)||(322584-322625)
chr4 (153-210)||(10094414-10094471)
chr4 (154-210)||(54090230-54090286)
chr4 (162-208)||(35018988-35019034)
chr4 (154-208)||(50328848-50328902)
chr4 (154-191)||(36851409-36851446)
chr4 (153-210)||(46474044-46474101)
chr4 (280-308)||(17888700-17888728)
[»] chr8 (14 HSPs)
chr8 (153-210)||(16523156-16523213)
chr8 (154-208)||(22324648-22324702)
chr8 (154-208)||(21525410-21525464)
chr8 (154-208)||(26021448-26021502)
chr8 (154-208)||(35806846-35806900)
chr8 (154-208)||(42013924-42013978)
chr8 (154-208)||(42072480-42072534)
chr8 (154-208)||(33934391-33934445)
chr8 (156-209)||(24065324-24065377)
chr8 (153-206)||(16591396-16591449)
chr8 (153-210)||(43282872-43282929)
chr8 (154-210)||(21488116-21488172)
chr8 (166-205)||(16819007-16819046)
chr8 (166-210)||(2271245-2271289)
[»] chr7 (15 HSPs)
chr7 (154-208)||(10576725-10576779)
chr7 (154-208)||(34259570-34259624)
chr7 (154-208)||(34707168-34707222)
chr7 (153-210)||(19334581-19334638)
chr7 (153-255)||(33057678-33057779)
chr7 (154-208)||(24320461-24320515)
chr7 (154-208)||(29555961-29556015)
chr7 (154-208)||(32876552-32876606)
chr7 (154-208)||(44164765-44164819)
chr7 (153-210)||(17303135-17303192)
chr7 (154-208)||(29238165-29238219)
chr7 (154-208)||(29981135-29981189)
chr7 (153-210)||(10334228-10334285)
chr7 (153-210)||(15017823-15017880)
chr7 (166-210)||(9770709-9770753)
[»] chr1 (19 HSPs)
chr1 (154-208)||(29149570-29149624)
chr1 (154-204)||(48392428-48392478)
chr1 (153-249)||(38859863-38859958)
chr1 (153-208)||(42456624-42456679)
chr1 (154-208)||(3346838-3346892)
chr1 (154-208)||(7742801-7742855)
chr1 (154-208)||(23908337-23908391)
chr1 (154-208)||(49902520-49902574)
chr1 (154-208)||(5975040-5975094)
chr1 (153-248)||(30745357-30745451)
chr1 (153-248)||(30766808-30766902)
chr1 (153-203)||(37189697-37189747)
chr1 (154-208)||(47022754-47022808)
chr1 (154-208)||(42517316-42517374)
chr1 (167-210)||(5558359-5558402)
chr1 (154-208)||(10156038-10156092)
chr1 (153-210)||(10907669-10907726)
chr1 (153-209)||(13131947-13132003)
chr1 (153-249)||(26835350-26835445)
[»] scaffold0079 (1 HSPs)
scaffold0079 (154-208)||(54571-54625)
[»] scaffold0045 (1 HSPs)
scaffold0045 (153-258)||(34473-34578)
[»] scaffold0086 (1 HSPs)
scaffold0086 (153-210)||(20852-20909)
[»] scaffold0016 (1 HSPs)
scaffold0016 (168-208)||(85552-85592)


Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 13 - 450
Target Start/End: Complemental strand, 47889971 - 47889540
Alignment:
Q  13 aatatagaagaaaaggacaaagaagaacaagtgaatgtcaagaacatcgacatgaaacgaagaaattagaataaagagtaatgtgagcatggacggttct 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  47889971 aatatagaagaaaaggacaaagaagaacaagtgaatgtcaagaacatcgacatgaaacgaagaaattagaataaagagcaatgtgagcatggacggttct 47889872  T
Q  113 atggcctggcgacctcgggtactcacccaannnnnnnnnnatgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttagann 212  Q
    ||||||||| |||| ||| |||||  ||||           | |   | |||||||||||||||||||||| |||||||||||||||||||||||| |      
T  47889871 atggcctggtgaccccggatactcgtccaatttttttattttttt--ttcctatgaatttcttatataaattcctataaattgggcaatttctttaaatt 47889774  T
Q  213 nnnnnattatttacttgacaatttctaatgtaaaccctataaacgttcgcaannnnnnnn-gcccgtactttacaataatcctggctccgccactgaatg 311  Q
         |||||||||||||||||||||||||||||||||||||||||| ||||         ||||||||||||||||||| ||||||||||||||||||     
T  47889773 tttttattatttacttgacaatttctaatgtaaaccctataaacgtttgcaatatttttttgcccgtactttacaataattctggctccgccactgaat- 47889675  T
Q  312 tgagcgtacaagaaaatttaatacacaaaaacgtttcggtttcttccctcttaaccacaatccgttgaaaaccatggaaccccatattctttgttctccc 411  Q
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47889674 ----cgtacaagaaaatttaatacacaaaaacgtttcggtttcttccctcttaaccacaatccgttgaaaaccatggaaccccatattctttgttctccc 47889579  T
Q  412 tattttgatgtctctcattataccatagtgtttggtttt 450  Q
    |||||||||||||||||||||||||||||||||||||||    
T  47889578 tattttgatgtctctcattataccatagtgtttggtttt 47889540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 154 - 209
Target Start/End: Complemental strand, 3178809 - 3178754
Alignment:
Q  154 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttag 209  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  3178809 tgtaaatccctatgaatttcttatataaatctctataaattgggcaatttctttag 3178754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 8950526 - 8950580
Alignment:
Q  154 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 208  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  8950526 tgtaaattcctatgaatttcttatataaatccctataaattgggcaatttcttta 8950580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 13856205 - 13856151
Alignment:
Q  154 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 208  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  13856205 tgtaaatccctatgaatttcttatataaatccctataaattggacaatttcttta 13856151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 153 - 255
Target Start/End: Complemental strand, 20382626 - 20382524
Alignment:
Q  153 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttagannnnnnnattatttacttgacaatttctaatgtaaac-ccta 251  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||       ||||||| |||| |||||||| |||||||| ||||    
T  20382626 atgtaaatccctatgaatttcttatataaacccctataaattgggaaatttctttagatttttttattatttgcttg-caatttcttatgtaaactccta 20382528  T
Q  252 taaa 255  Q
    ||||    
T  20382527 taaa 20382524  T

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Target: chr3; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 21853303 - 21853249
Alignment:
Q  154 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 208  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  21853303 tgtaaatccctatgaatttcttatataaaaccctataaattgggcaatttcttta 21853249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 23467516 - 23467570
Alignment:
Q  154 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 208  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  23467516 tgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttta 23467570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 40845939 - 40845993
Alignment:
Q  154 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 208  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  40845939 tgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttta 40845993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 153 - 254
Target Start/End: Original strand, 43347357 - 43347457
Alignment:
Q  153 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttagannnnnnnattatttacttgacaatttctaatgtaaaccctat 252  Q
    |||||||| ||| ||||||||||||||||| ||||| |||||||||||||||||||||       ||||||| |||| |||||||| |||||||||||||    
T  43347357 atgtaaattcctctgaatttcttatataaacccctacaaattgggcaatttctttagattttttgattatttgcttg-caatttcttatgtaaaccctat 43347455  T
Q  253 aa 254  Q
    ||    
T  43347456 aa 43347457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 5391563 - 5391509
Alignment:
Q  154 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 208  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  5391563 tgtaaatccctatgaatttcttatataaacccctataaattggacaatttcttta 5391509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 153 - 210
Target Start/End: Complemental strand, 1781869 - 1781812
Alignment:
Q  153 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 210  Q
    |||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||    
T  1781869 atgtaaatccctctgaatttcttatataaaccccaataaattgggcaatttctttaga 1781812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 32352951 - 32352899
Alignment:
Q  156 taaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 208  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  32352951 taaatccctatgaatttcttatataaacccctataaattaggcaatttcttta 32352899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 36539739 - 36539684
Alignment:
Q  153 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 208  Q
    |||||||||||||| ||||||||||||||  |||||||||||||||||||||||||    
T  36539739 atgtaaatccctataaatttcttatataatcccctataaattgggcaatttcttta 36539684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 44994990 - 44995045
Alignment:
Q  154 tgtaaatccctatgaatttcttatataaatccc-tataaattgggcaatttcttta 208  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  44994990 tgtaaatccctatgaatttcttatataaaccccttataaattgggcaatttcttta 44995045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 153 - 210
Target Start/End: Original strand, 19649393 - 19649450
Alignment:
Q  153 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 210  Q
    ||||||||| |||||||||||||||||||| || |||||||||| |||||||||||||    
T  19649393 atgtaaatcgctatgaatttcttatataaacccttataaattggacaatttctttaga 19649450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 155 - 210
Target Start/End: Complemental strand, 54547009 - 54546954
Alignment:
Q  155 gtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 210  Q
    |||||| ||| ||||||||||||||||| ||||||||||||| |||||||||||||    
T  54547009 gtaaattcctttgaatttcttatataaacccctataaattggacaatttctttaga 54546954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 153 - 210
Target Start/End: Original strand, 10839401 - 10839458
Alignment:
Q  153 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 210  Q
    ||||||||  || ||||||||||||||||| | |||||||||||||||||||||||||    
T  10839401 atgtaaatttctctgaatttcttatataaacctctataaattgggcaatttctttaga 10839458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 153 - 210
Target Start/End: Complemental strand, 8926873 - 8926816
Alignment:
Q  153 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 210  Q
    |||||||| ||| ||||||||| ||||||| ||||||||||| |||||||||| ||||    
T  8926873 atgtaaattcctctgaatttctgatataaacccctataaatttggcaatttctgtaga 8926816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 27642767 - 27642723
Alignment:
Q  153 atgtaaatccctatgaatttcttatataaatccctataaattggg 197  Q
    |||||||||| | |||||||||||||||||||| |||||||||||    
T  27642767 atgtaaatccttttgaatttcttatataaatccttataaattggg 27642723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 210
Target Start/End: Original strand, 22845398 - 22845440
Alignment:
Q  168 aatttcttatataaatccctataaattgggcaatttctttaga 210  Q
    ||||||||||||||| ||||||||||| | |||||||||||||    
T  22845398 aatttcttatataaacccctataaatttgacaatttctttaga 22845440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 247
Target Start/End: Complemental strand, 48206960 - 48206868
Alignment:
Q  153 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttagannnnnnnattatttacttgacaatttctaatgtaaac 247  Q
    |||||||| ||| |||||| |||||||||| ||||||||||| | |||||| ||||||       |||||||||||| |||||||| ||||||||    
T  48206960 atgtaaattcctctgaatt-cttatataaacccctataaatttgacaatttttttagattttttgattatttacttg-caatttcttatgtaaac 48206868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 791906 - 791866
Alignment:
Q  168 aatttcttatataaatccctataaattgggcaatttcttta 208  Q
    |||||||||||||||| ||||||||||| | ||||||||||    
T  791906 aatttcttatataaattcctataaattgcgtaatttcttta 791866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 153 - 210
Target Start/End: Original strand, 6318479 - 6318536
Alignment:
Q  153 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6318479 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 6318536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 153 - 208
Target Start/End: Original strand, 40277309 - 40277364
Alignment:
Q  153 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 208  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  40277309 atgtaaatccctataaatttcttatataaatccctataaattgggcaatttcttta 40277364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 14186460 - 14186514
Alignment:
Q  154 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 208  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  14186460 tgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttta 14186514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 14942066 - 14942120
Alignment:
Q  154 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 208  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  14942066 tgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttta 14942120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 42769780 - 42769834
Alignment:
Q  154 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 208  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  42769780 tgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttta 42769834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 19181654 - 19181600
Alignment:
Q  154 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 208  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  19181654 tgtaaattcctatgaatttcttatataaacccctataaattgggcaatttcttta 19181600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 29846548 - 29846494
Alignment:
Q  154 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 208  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  29846548 tgtaaatccctatgaatttcttatataaacccctataaattggacaatttcttta 29846494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 1387312 - 1387366
Alignment:
Q  156 taaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 210  Q
    ||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||    
T  1387312 taaatccctatgaatttcttagataaacccctataaattgggtaatttctttaga 1387366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 33009777 - 33009723
Alignment:
Q  156 taaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 210  Q
    ||||||||||||||||| |||||||||||| |||||||||| |||||||||||||    
T  33009777 taaatccctatgaatttgttatataaatccttataaattggacaatttctttaga 33009723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 3956679 - 3956624
Alignment:
Q  153 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 208  Q
    |||||||||||||||||||| ||||||||| |||| |||||||| |||||||||||    
T  3956679 atgtaaatccctatgaatttattatataaacccctgtaaattggacaatttcttta 3956624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 153 - 210
Target Start/End: Original strand, 14539725 - 14539782
Alignment:
Q  153 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 210  Q
    |||||| | ||| |||||||||||||||||| |||||||||| |||||||||||||||    
T  14539725 atgtaatttcctctgaatttcttatataaattcctataaattaggcaatttctttaga 14539782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 210
Target Start/End: Complemental strand, 43139839 - 43139797
Alignment:
Q  168 aatttcttatataaatccctataaattgggcaatttctttaga 210  Q
    ||||||||||||||| |||||||||||| ||||||||||||||    
T  43139839 aatttcttatataaacccctataaattgagcaatttctttaga 43139797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 153 - 210
Target Start/End: Original strand, 41674727 - 41674784
Alignment:
Q  153 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 210  Q
    ||||||||| || ||||||| ||||||||| || |||||||||| |||||||||||||    
T  41674727 atgtaaatctctctgaattttttatataaacccttataaattggacaatttctttaga 41674784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 210
Target Start/End: Complemental strand, 2888148 - 2888091
Alignment:
Q  153 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 210  Q
    ||||||||| |||||||||| |||||||||  |||||||||||  |||||| ||||||    
T  2888148 atgtaaatctctatgaattttttatataaactcctataaattgaacaatttttttaga 2888091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 208
Target Start/End: Original strand, 3597903 - 3597943
Alignment:
Q  168 aatttcttatataaatccctataaattgggcaatttcttta 208  Q
    |||||||| | |||||||||||||||||| |||||||||||    
T  3597903 aatttcttgtgtaaatccctataaattggacaatttcttta 3597943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 308
Target Start/End: Complemental strand, 3956550 - 3956522
Alignment:
Q  280 ctttacaataatcctggctccgccactga 308  Q
    |||||||||||||||||||||||||||||    
T  3956550 ctttacaataatcctggctccgccactga 3956522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 14309820 - 14309874
Alignment:
Q  154 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14309820 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 14309874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 1727955 - 1728009
Alignment:
Q  154 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 208  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  1727955 tgtaaatccctatgaatttcttatataaacccctataaattgagcaatttcttta 1728009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 9231876 - 9231930
Alignment:
Q  154 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 208  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  9231876 tgtaaatctctatgaatttcttatataaacccctataaattgggcaatttcttta 9231930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 13627646 - 13627592
Alignment:
Q  154 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 208  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  13627646 tgtaaatccctatgaatttcttatataaacccctataaattgagcaatttcttta 13627592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 24694673 - 24694727
Alignment:
Q  154 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 208  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  24694673 tgtaaatccctatgaatttcttatataaactcctataaattgggcaatttcttta 24694727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 153 - 255
Target Start/End: Original strand, 13103139 - 13103241
Alignment:
Q  153 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttagannnnnnnattatttacttgacaatttctaatgtaaac-ccta 251  Q
    |||||||| ||| ||||||||||||||||| |  ||||||||||||||||||||||||       ||||||| |||| ||||||||||||||||| ||||    
T  13103139 atgtaaattcctctgaatttcttatataaacctttataaattgggcaatttctttagattttttgattatttgcttg-caatttctaatgtaaacaccta 13103237  T
Q  252 taaa 255  Q
    ||||    
T  13103238 taaa 13103241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 153 - 208
Target Start/End: Original strand, 28750671 - 28750726
Alignment:
Q  153 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 208  Q
    |||||||| | | ||||||||||||||||| |||||||||||||||||||||||||    
T  28750671 atgtaaattcttctgaatttcttatataaacccctataaattgggcaatttcttta 28750726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 154 - 204
Target Start/End: Original strand, 24497596 - 24497646
Alignment:
Q  154 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttc 204  Q
    ||||||| ||| ||||||||||||||||| |||||||||||||||||||||    
T  24497596 tgtaaattcctctgaatttcttatataaacccctataaattgggcaatttc 24497646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 153 - 210
Target Start/End: Complemental strand, 34103792 - 34103735
Alignment:
Q  153 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 210  Q
    |||||||| ||| ||||||||||||||||| || ||||||||||| ||||||||||||    
T  34103792 atgtaaattcctctgaatttcttatataaacccgtataaattgggaaatttctttaga 34103735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 166 - 210
Target Start/End: Complemental strand, 11212765 - 11212721
Alignment:
Q  166 tgaatttcttatataaatccctataaattgggcaatttctttaga 210  Q
    ||||||| || ||||||||||||||||||||||||||||||||||    
T  11212765 tgaattttttctataaatccctataaattgggcaatttctttaga 11212721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 168 - 209
Target Start/End: Original strand, 8412717 - 8412758
Alignment:
Q  168 aatttcttatataaatccctataaattgggcaatttctttag 209  Q
    |||||||||||||||  |||||||||||||||||||||||||    
T  8412717 aatttcttatataaacgcctataaattgggcaatttctttag 8412758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 153 - 210
Target Start/End: Complemental strand, 27863806 - 27863749
Alignment:
Q  153 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 210  Q
    ||||||||  || ||||||||||||||||| || |||||||||| |||||||||||||    
T  27863806 atgtaaatttctctgaatttcttatataaacccttataaattggacaatttctttaga 27863749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 153 - 255
Target Start/End: Complemental strand, 10081252 - 10081150
Alignment:
Q  153 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttagannnnnnnattatttacttgacaatttctaatgtaaac-ccta 251  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||       ||||||| ||| ||||||||| |||||||| ||||    
T  10081252 atgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttagatttttttattatttgctt-acaatttcttatgtaaactccta 10081154  T
Q  252 taaa 255  Q
    ||||    
T  10081153 taaa 10081150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 153 - 249
Target Start/End: Original strand, 8456984 - 8457079
Alignment:
Q  153 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttagannnnnnnattatttacttgacaatttctaatgtaaaccc 249  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||       ||||||| |||| |||||||| ||||||||||    
T  8456984 atgtaaatccctatgaatttcttatataaccccctataaattgggcaatttctttagatttttttattatttgcttg-caatttcttatgtaaaccc 8457079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 153 - 255
Target Start/End: Complemental strand, 11856402 - 11856300
Alignment:
Q  153 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttagannnnnnnattatttacttgacaatttctaatgtaaac-ccta 251  Q
    ||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||       |||||||||||| |||||||| |||||||| ||||    
T  11856402 atgtaaatcgctctgaatttcttatataaatcactataaattgggcaatttctttagattttttgattatttacttg-caatttcttatgtaaactccta 11856304  T
Q  252 taaa 255  Q
    ||||    
T  11856303 taaa 11856300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 23218591 - 23218537
Alignment:
Q  154 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 208  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  23218591 tgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttta 23218537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 37169055 - 37169109
Alignment:
Q  154 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 208  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  37169055 tgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttta 37169109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 38397704 - 38397650
Alignment:
Q  154 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 208  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  38397704 tgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttta 38397650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 9738008 - 9738061
Alignment:
Q  157 aaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 210  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  9738008 aaatccctatgaatttcttatataaatccctataaattggacaatttctttaga 9738061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 154 - 210
Target Start/End: Original strand, 39862509 - 39862565
Alignment:
Q  154 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 210  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  39862509 tgtaaattcctatgaatttcttatataaacccctataaattgggcaatttctttaga 39862565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 6257432 - 6257486
Alignment:
Q  154 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 208  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  6257432 tgtaaatccctatgaatttcttatacaaacccctataaattgggcaatttcttta 6257486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 153 - 255
Target Start/End: Original strand, 614413 - 614515
Alignment:
Q  153 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttagannnnnnnattatttacttgacaatttctaatgtaaac-ccta 251  Q
    |||||||| ||| ||||||| ||||||||||||||||||||| |||||||||||||||       ||||||| |||| |||||||| |||||||| ||||    
T  614413 atgtaaattcctctgaattttttatataaatccctataaatttggcaatttctttagatttttttattatttgcttg-caatttcttatgtaaacaccta 614511  T
Q  252 taaa 255  Q
    ||||    
T  614512 taaa 614515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 16618592 - 16618646
Alignment:
Q  154 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 208  Q
    |||||||||||||||||||||||||||||  |||||||||||| |||||| ||||    
T  16618592 tgtaaatccctatgaatttcttatataaactcctataaattggacaattttttta 16618646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 15631718 - 15631665
Alignment:
Q  156 taaatccctatgaatttcttatataaa-tccctataaattgggcaatttcttta 208  Q
    |||||||||||||||||||||||||||  ||||||||||||| |||||||||||    
T  15631718 taaatccctatgaatttcttatataaaccccctataaattggacaatttcttta 15631665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 153 - 210
Target Start/End: Complemental strand, 42119729 - 42119672
Alignment:
Q  153 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 210  Q
    |||||||| ||| ||||||||||||||||| | ||||||||||| |||||||||||||    
T  42119729 atgtaaattcctctgaatttcttatataaacctctataaattggacaatttctttaga 42119672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 29790240 - 29790296
Alignment:
Q  153 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttag 209  Q
    |||||||| | ||||||||||||||||||| |  |||||||||||||||||||||||    
T  29790240 atgtaaattcttatgaatttcttatataaacctttataaattgggcaatttctttag 29790296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 153 - 249
Target Start/End: Original strand, 25560348 - 25560443
Alignment:
Q  153 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttagannnnnnnattatttacttgacaatttctaatgtaaaccc 249  Q
    |||||||||| ||| |||||||||||||||   ||||||||||| |||||||||||||       ||||||| |||| |||||||| ||||||||||    
T  25560348 atgtaaatccttataaatttcttatataaacatctataaattggacaatttctttagattattttattatttgcttg-caatttcttatgtaaaccc 25560443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 153 - 210
Target Start/End: Complemental strand, 27916247 - 27916190
Alignment:
Q  153 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 210  Q
    |||||||| ||| |||||||||||||||||  ||||||||||| |||||||| |||||    
T  27916247 atgtaaattcctctgaatttcttatataaactcctataaattgagcaatttcattaga 27916190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 153 - 210
Target Start/End: Original strand, 36769095 - 36769152
Alignment:
Q  153 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 210  Q
    |||||||| ||| ||||||||||||||||| | |||| |||| |||||||||||||||    
T  36769095 atgtaaattcctctgaatttcttatataaacctctatgaattaggcaatttctttaga 36769152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 208
Target Start/End: Original strand, 33271291 - 33271346
Alignment:
Q  153 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 208  Q
    |||||||| ||  ||||||||||||||||| | ||||||||||| |||||||||||    
T  33271291 atgtaaattccgttgaatttcttatataaacctctataaattggacaatttcttta 33271346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 210
Target Start/End: Original strand, 19322058 - 19322100
Alignment:
Q  168 aatttcttatataaatccctataaattgggcaatttctttaga 210  Q
    |||||||||||||||  |||||||||||||||||| |||||||    
T  19322058 aatttcttatataaactcctataaattgggcaattactttaga 19322100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 210
Target Start/End: Complemental strand, 10115267 - 10115210
Alignment:
Q  153 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 210  Q
    |||||||| ||| || |||||||||||||| ||| ||||||| | |||||||||||||    
T  10115267 atgtaaattcctctggatttcttatataaaccccaataaattagacaatttctttaga 10115210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 52632624 - 52632570
Alignment:
Q  154 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52632624 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 52632570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 1535877 - 1535823
Alignment:
Q  154 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 208  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  1535877 tgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttta 1535823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 36012207 - 36012261
Alignment:
Q  154 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 208  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  36012207 tgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttta 36012261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 49284463 - 49284409
Alignment:
Q  154 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 208  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  49284463 tgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttta 49284409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 153 - 249
Target Start/End: Original strand, 17888571 - 17888666
Alignment:
Q  153 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttagannnnnnnattatttacttgacaatttctaatgtaaaccc 249  Q
    |||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||       ||||||| |||| |||||||| ||||||||||    
T  17888571 atgtaaattcctatgaatttcttatataaccccctataaattgggcaatttctttagatttttttattatttgcttg-caatttcttatgtaaaccc 17888666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 34241099 - 34241045
Alignment:
Q  154 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 208  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  34241099 tgtagatccctatgaatttcttatataaacccctataaattgggcaatttcttta 34241045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 46583563 - 46583617
Alignment:
Q  154 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 208  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  46583563 tgtaaatccctatgaatttcttatataaacccctataaattaggcaatttcttta 46583617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 153 - 210
Target Start/End: Complemental strand, 31377497 - 31377440
Alignment:
Q  153 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 210  Q
    |||||||||||||||||||||||||||||  | |||||||||||||||||||||||||    
T  31377497 atgtaaatccctatgaatttcttatataaccctctataaattgggcaatttctttaga 31377440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 153 - 209
Target Start/End: Complemental strand, 11054563 - 11054507
Alignment:
Q  153 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttag 209  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||| |||||||    
T  11054563 atgtaaatccctatgaatttcttatataaacctctataaattgggcaatctctttag 11054507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 16338235 - 16338289
Alignment:
Q  154 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 208  Q
    ||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||    
T  16338235 tgtaaattcctatgaattttttatataaatccctataaattggacaatttcttta 16338289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 25954856 - 25954802
Alignment:
Q  154 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 208  Q
    ||||||| |||||||||||||||||||||  ||||||||||||||||||||||||    
T  25954856 tgtaaattcctatgaatttcttatataaactcctataaattgggcaatttcttta 25954802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 153 - 210
Target Start/End: Original strand, 9742554 - 9742611
Alignment:
Q  153 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 210  Q
    |||||||| ||| |||||||||||||| || |||||||||||||||||||||||||||    
T  9742554 atgtaaattcctctgaatttcttatattaacccctataaattgggcaatttctttaga 9742611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 20818673 - 20818617
Alignment:
Q  154 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 210  Q
    |||||||||||||||||||||||||||||  |||||||||||| |||||| ||||||    
T  20818673 tgtaaatccctatgaatttcttatataaactcctataaattggtcaatttttttaga 20818617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 37801286 - 37801340
Alignment:
Q  154 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 208  Q
    |||||||  |||||||||| ||||||||||||||||||||||||||| |||||||    
T  37801286 tgtaaatttctatgaattttttatataaatccctataaattgggcaaattcttta 37801340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 153 - 210
Target Start/End: Original strand, 12792252 - 12792309
Alignment:
Q  153 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 210  Q
    ||||||||  || ||||||||||||||||| ||||||||||||||||||| |||||||    
T  12792252 atgtaaatttctctgaatttcttatataaacccctataaattgggcaattactttaga 12792309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 153 - 210
Target Start/End: Complemental strand, 47084119 - 47084062
Alignment:
Q  153 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 210  Q
    ||||||||  || ||||||||||||||||| |||||||||||||| ||||||||||||    
T  47084119 atgtaaatttctctgaatttcttatataaacccctataaattgggtaatttctttaga 47084062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 168 - 208
Target Start/End: Original strand, 5780790 - 5780830
Alignment:
Q  168 aatttcttatataaatccctataaattgggcaatttcttta 208  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  5780790 aatttcttatataaatccttataaattgggcaatttcttta 5780830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 167 - 208
Target Start/End: Original strand, 322584 - 322625
Alignment:
Q  167 gaatttcttatataaatccctataaattgggcaatttcttta 208  Q
    |||||||||||||||| ||||||||||||| |||||||||||    
T  322584 gaatttcttatataaacccctataaattggacaatttcttta 322625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 153 - 210
Target Start/End: Original strand, 10094414 - 10094471
Alignment:
Q  153 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 210  Q
    ||||||||  || ||||||||||||||||| |||||||||||||| ||||| ||||||    
T  10094414 atgtaaatttctctgaatttcttatataaacccctataaattgggtaatttatttaga 10094471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 54090286 - 54090230
Alignment:
Q  154 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 210  Q
    ||||||||||| ||||||| |||||||||  | ||||||||||||||||| ||||||    
T  54090286 tgtaaatccctctgaatttattatataaactcttataaattgggcaatttttttaga 54090230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 35019034 - 35018988
Alignment:
Q  162 cctatgaatttcttatataaatccctataaattgggcaatttcttta 208  Q
    ||||||||||||||||||||| || |||||||| || ||||||||||    
T  35019034 cctatgaatttcttatataaacccttataaattaggtaatttcttta 35018988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 50328902 - 50328848
Alignment:
Q  154 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 208  Q
    ||||||| ||| | ||||||||||||||| | ||||||||||| |||||||||||    
T  50328902 tgtaaattcctcttaatttcttatataaacctctataaattggacaatttcttta 50328848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 191
Target Start/End: Original strand, 36851409 - 36851446
Alignment:
Q  154 tgtaaatccctatgaatttcttatataaatccctataa 191  Q
    ||||||||||||||||||| ||||||||| ||||||||    
T  36851409 tgtaaatccctatgaatttattatataaacccctataa 36851446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 210
Target Start/End: Complemental strand, 46474101 - 46474044
Alignment:
Q  153 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 210  Q
    |||||||| ||| ||||||| ||||||||| || |||||||||  |||||||||||||    
T  46474101 atgtaaattcctgtgaattttttatataaacccatataaattgtacaatttctttaga 46474044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 308
Target Start/End: Original strand, 17888700 - 17888728
Alignment:
Q  280 ctttacaataatcctggctccgccactga 308  Q
    |||||||||||||||||||||||||||||    
T  17888700 ctttacaataatcctggctccgccactga 17888728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 8e-22; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 153 - 210
Target Start/End: Complemental strand, 16523213 - 16523156
Alignment:
Q  153 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  16523213 atgtaaatccctatgaatttcttatataaatccctataaattgggcaacttctttaga 16523156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 22324702 - 22324648
Alignment:
Q  154 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 208  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  22324702 tgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttta 22324648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 21525464 - 21525410
Alignment:
Q  154 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 208  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  21525464 tgtaaatccctatgaatttcttatataaacccctataaattggacaatttcttta 21525410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 26021502 - 26021448
Alignment:
Q  154 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 208  Q
    ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  26021502 tgtaaatccctatgaatttcttatataaacccctataaattgggtaatttcttta 26021448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 35806900 - 35806846
Alignment:
Q  154 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 208  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  35806900 tgtaaatctctatgaatttcttatataaacccctataaattgggcaatttcttta 35806846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 42013978 - 42013924
Alignment:
Q  154 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 208  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  42013978 tgtaaatccctatgaatttcttatataaactcctataaattgggcaatttcttta 42013924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 42072534 - 42072480
Alignment:
Q  154 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 208  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  42072534 tgtaaatccctatgaatttcttatataaacccctataaattggacaatttcttta 42072480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 33934391 - 33934445
Alignment:
Q  154 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 208  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||    
T  33934391 tgtaaattcctatgaatttcttatataaacccctataaattgggcaattttttta 33934445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 156 - 209
Target Start/End: Complemental strand, 24065377 - 24065324
Alignment:
Q  156 taaatccctatgaatttcttatataaatccctataaattgggcaatttctttag 209  Q
    |||||| ||||||||||||||||||||  |||||||||||||||||||||||||    
T  24065377 taaatctctatgaatttcttatataaactcctataaattgggcaatttctttag 24065324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 153 - 206
Target Start/End: Original strand, 16591396 - 16591449
Alignment:
Q  153 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctt 206  Q
    ||||||||  ||| |||||||||||||||||| |||||||||||||||||||||    
T  16591396 atgtaaatttctaagaatttcttatataaatcactataaattgggcaatttctt 16591449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 153 - 210
Target Start/End: Original strand, 43282872 - 43282929
Alignment:
Q  153 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 210  Q
    |||||||| | | ||||||| |||||||||||||||||||||||| |||||| |||||    
T  43282872 atgtaaattcttctgaatttattatataaatccctataaattgggtaatttcattaga 43282929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 21488172 - 21488116
Alignment:
Q  154 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 210  Q
    ||||||| ||| ||||||||||||| ||| ||| ||||||||| |||||||||||||    
T  21488172 tgtaaattcctttgaatttcttatagaaaccccgataaattggacaatttctttaga 21488116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 166 - 205
Target Start/End: Original strand, 16819007 - 16819046
Alignment:
Q  166 tgaatttcttatataaatccctataaattgggcaatttct 205  Q
    ||||||||||||||||| |||||||||||||| |||||||    
T  16819007 tgaatttcttatataaacccctataaattgggtaatttct 16819046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 210
Target Start/End: Complemental strand, 2271289 - 2271245
Alignment:
Q  166 tgaatttcttatataaatccctataaattgggcaatttctttaga 210  Q
    ||||||||||||||||| ||||||| ||| || ||||||||||||    
T  2271289 tgaatttcttatataaacccctatatattaggtaatttctttaga 2271245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 10576779 - 10576725
Alignment:
Q  154 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 208  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  10576779 tgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttta 10576725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 34259624 - 34259570
Alignment:
Q  154 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 208  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  34259624 tgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttta 34259570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 34707222 - 34707168
Alignment:
Q  154 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 208  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  34707222 tgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttta 34707168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 153 - 210
Target Start/End: Original strand, 19334581 - 19334638
Alignment:
Q  153 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 210  Q
    |||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  19334581 atgtaaatacctatgaatttcttatataaacccctataaattggacaatttctttaga 19334638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 153 - 255
Target Start/End: Original strand, 33057678 - 33057779
Alignment:
Q  153 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttagannnnnnnattatttacttgacaatttctaatgtaaaccctat 252  Q
    |||||||||||||||||||||||||||||  ||||||||||||  |||||||||||||       ||||||| |||| |||||||| ||||||| |||||    
T  33057678 atgtaaatccctatgaatttcttatataatcccctataaattgaacaatttctttagatttttttattatttgcttg-caatttcttatgtaaatcctat 33057776  T
Q  253 aaa 255  Q
    |||    
T  33057777 aaa 33057779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 24320461 - 24320515
Alignment:
Q  154 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 208  Q
    ||||||| |||| |||||||||||||||| |||||||||||||||||||||||||    
T  24320461 tgtaaattcctacgaatttcttatataaacccctataaattgggcaatttcttta 24320515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 29555961 - 29556015
Alignment:
Q  154 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 208  Q
    ||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||    
T  29555961 tgtaaattcctatgaatttcttatataaacccctataaattggacaatttcttta 29556015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 32876552 - 32876606
Alignment:
Q  154 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 208  Q
    |||| |||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  32876552 tgtagatccctatgaatttcttatataaacccctataaattggacaatttcttta 32876606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 44164765 - 44164819
Alignment:
Q  154 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 208  Q
    |||||||  |||||||||||||||||||| |||||||||||||||||||||||||    
T  44164765 tgtaaatttctatgaatttcttatataaacccctataaattgggcaatttcttta 44164819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 153 - 210
Target Start/End: Original strand, 17303135 - 17303192
Alignment:
Q  153 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 210  Q
    |||||||| ||||||||||||||||||||| || | ||||||||||||||||||||||    
T  17303135 atgtaaattcctatgaatttcttatataaacccttgtaaattgggcaatttctttaga 17303192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 29238165 - 29238219
Alignment:
Q  154 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 208  Q
    ||||||||||||||||||||||||||||| ||||| |||||||  ||||||||||    
T  29238165 tgtaaatccctatgaatttcttatataaacccctaaaaattggaaaatttcttta 29238219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 29981135 - 29981189
Alignment:
Q  154 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 208  Q
    |||||||||||||||||||||||||||||   ||||||||||| |||||||||||    
T  29981135 tgtaaatccctatgaatttcttatataaacttctataaattggacaatttcttta 29981189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 153 - 210
Target Start/End: Complemental strand, 10334285 - 10334228
Alignment:
Q  153 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 210  Q
    |||||||| ||| |||||||||||||||||  | ||||||||||||||||||||||||    
T  10334285 atgtaaattcctctgaatttcttatataaactcttataaattgggcaatttctttaga 10334228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 153 - 210
Target Start/End: Complemental strand, 15017880 - 15017823
Alignment:
Q  153 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 210  Q
    |||||||| ||| |||||||||||||||||  | |||||||||| |||||||||||||    
T  15017880 atgtaaattcctctgaatttcttatataaacgcgtataaattggacaatttctttaga 15017823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 210
Target Start/End: Complemental strand, 9770753 - 9770709
Alignment:
Q  166 tgaatttcttatataaatccctataaattgggcaatttctttaga 210  Q
    ||||||||||||||||| | |||| |||||| |||||||||||||    
T  9770753 tgaatttcttatataaaccactatgaattggacaatttctttaga 9770709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 29149570 - 29149624
Alignment:
Q  154 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 208  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  29149570 tgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttta 29149624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 154 - 204
Target Start/End: Original strand, 48392428 - 48392478
Alignment:
Q  154 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttc 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48392428 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttc 48392478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 153 - 249
Target Start/End: Complemental strand, 38859958 - 38859863
Alignment:
Q  153 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttagannnnnnnattatttacttgacaatttctaatgtaaaccc 249  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||       ||||||| |||| |||||||| ||||||||||    
T  38859958 atgtaaattcctatgaatttcttatataaacccctataaattgggcaatttttttagatttttttattatttgcttg-caatttcttatgtaaaccc 38859863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 42456679 - 42456624
Alignment:
Q  153 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 208  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  42456679 atgtaaattcctatgaatttcttatataaacccctataaattgggcaatttcttta 42456624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 3346892 - 3346838
Alignment:
Q  154 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 208  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  3346892 tgtaaatccctatgaatttcttatataaacccctataaattggacaatttcttta 3346838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 7742801 - 7742855
Alignment:
Q  154 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 208  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  7742801 tgtaaatccttatgaatttcttatataaacccctataaattgggcaatttcttta 7742855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 23908391 - 23908337
Alignment:
Q  154 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 208  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  23908391 tgtaaattcctatgaatttcttatataaatccctataaattggacaatttcttta 23908337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 49902574 - 49902520
Alignment:
Q  154 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 208  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  49902574 tgtaaatccctatgaatttcttatataaacccctataaatagggcaatttcttta 49902520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 5975094 - 5975040
Alignment:
Q  154 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 208  Q
    |||||||||||| |||||||||||||||| ||||||||||| |||||||||||||    
T  5975094 tgtaaatccctaagaatttcttatataaacccctataaattaggcaatttcttta 5975040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 153 - 248
Target Start/End: Complemental strand, 30745451 - 30745357
Alignment:
Q  153 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttagannnnnnnattatttacttgacaatttctaatgtaaacc 248  Q
    ||||||||  || |||||||||| |||||||||||||||||||| ||||||||||| |       |||||||||||| |||||||| |||||||||    
T  30745451 atgtaaatttctctgaatttcttttataaatccctataaattggacaatttctttaaattttttgattatttacttg-caatttcttatgtaaacc 30745357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 153 - 248
Target Start/End: Complemental strand, 30766902 - 30766808
Alignment:
Q  153 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttagannnnnnnattatttacttgacaatttctaatgtaaacc 248  Q
    ||||||||  || |||||||||| |||||||||||||||||||| ||||||||||| |       |||||||||||| |||||||| |||||||||    
T  30766902 atgtaaatttctctgaatttcttttataaatccctataaattggacaatttctttaaattttttgattatttacttg-caatttcttatgtaaacc 30766808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 153 - 203
Target Start/End: Complemental strand, 37189747 - 37189697
Alignment:
Q  153 atgtaaatccctatgaatttcttatataaatccctataaattgggcaattt 203  Q
    ||||||||| |||||||||||||||||||||| ||||||||||| ||||||    
T  37189747 atgtaaatctctatgaatttcttatataaatctctataaattggacaattt 37189697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 47022808 - 47022754
Alignment:
Q  154 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 208  Q
    |||||||| ||||||||||||||||||||  |||||||||| |||||||||||||    
T  47022808 tgtaaatctctatgaatttcttatataaactcctataaattaggcaatttcttta 47022754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 42517316 - 42517374
Alignment:
Q  154 tgtaaatccctatgaatttcttatataaat----ccctataaattgggcaatttcttta 208  Q
    |||||||||||||||||||||||||||||     |||||||||||||||||||||||||    
T  42517316 tgtaaatccctatgaatttcttatataaacaaacccctataaattgggcaatttcttta 42517374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 167 - 210
Target Start/End: Complemental strand, 5558402 - 5558359
Alignment:
Q  167 gaatttcttatataaatccctataaattgggcaatttctttaga 210  Q
    |||||||||||||||| ||||||||||||| |||||||||||||    
T  5558402 gaatttcttatataaacccctataaattggacaatttctttaga 5558359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 10156038 - 10156092
Alignment:
Q  154 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 208  Q
    ||||||| |||||||||||||||||||||   ||||||||||| |||||||||||    
T  10156038 tgtaaattcctatgaatttcttatataaacttctataaattggacaatttcttta 10156092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 153 - 210
Target Start/End: Original strand, 10907669 - 10907726
Alignment:
Q  153 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 210  Q
    |||||||| ||| ||||||||||||||||| ||||||||||  | |||||||||||||    
T  10907669 atgtaaattcctctgaatttcttatataaacccctataaatcagacaatttctttaga 10907726  T

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Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 209
Target Start/End: Complemental strand, 13132003 - 13131947
Alignment:
Q  153 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttag 209  Q
    |||||||| ||| | ||||| ||||||||||| ||||||||||| ||||||||||||    
T  13132003 atgtaaattcctctaaattttttatataaatcactataaattggacaatttctttag 13131947  T

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Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 249
Target Start/End: Complemental strand, 26835445 - 26835350
Alignment:
Q  153 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttagannnnnnnattatttacttgacaatttctaatgtaaaccc 249  Q
    |||||||| | |||||||||||||||||||  |||||||||||  |||||| ||||||       ||||||| |||| |||||||| ||||||||||    
T  26835445 atgtaaattcatatgaatttcttatataaactcctataaattgaacaatttttttagattttttgattatttgcttg-caatttctcatgtaaaccc 26835350  T

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Target: scaffold0079 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 54625 - 54571
Alignment:
Q  154 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 208  Q
    ||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||    
T  54625 tgtaaattcctatgaattttttatataaatccctataaattggacaatttcttta 54571  T

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Target: scaffold0045 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 153 - 258
Target Start/End: Original strand, 34473 - 34578
Alignment:
Q  153 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttagannnnnnnattatttacttgacaatttctaatgtaaac-ccta 251  Q
    |||||||||||| ||||||  ||||||||||| ||||||||||| || ||||||||||       ||||||| ||| ||||||||| |||||||| ||||    
T  34473 atgtaaatccctctgaattctttatataaatctctataaattggacagtttctttagattttttgattatttgctt-acaatttcttatgtaaactccta 34571  T
Q  252 taaacgt 258  Q
    |||||||    
T  34572 taaacgt 34578  T

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Target: scaffold0086 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 153 - 210
Target Start/End: Original strand, 20852 - 20909
Alignment:
Q  153 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 210  Q
    |||||||| ||| ||||||||||||||||| | ||||||||||| |||||| ||||||    
T  20852 atgtaaattcctctgaatttcttatataaagctctataaattggacaatttttttaga 20909  T

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Target: scaffold0016 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 85592 - 85552
Alignment:
Q  168 aatttcttatataaatccctataaattgggcaatttcttta 208  Q
    ||||| ||||| ||||||||||||||||| |||||||||||    
T  85592 aattttttataaaaatccctataaattggacaatttcttta 85552  T

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