View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1949_high_11 (Length: 261)
Name: NF1949_high_11
Description: NF1949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1949_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 15 - 251
Target Start/End: Complemental strand, 2760582 - 2760346
Alignment:
| Q |
15 |
actttcctccacaactaatttagctttttacttctttacctaaaattttgaatcttgtcattattctttggaggataaacttgattagcttttatggaaa |
114 |
Q |
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| T |
2760582 |
actttcctccacaactaatttagctttttacttctttacctaaaattttgaatcttgtcattattctttggaggataaacttgattagcttttatggaaa |
2760483 |
T |
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| Q |
115 |
catttaaattccgatgacttgcagttgaatgaaatattattttttggagattgatgcatggaaagatctccacttatgagaatttggcaatgagagggtg |
214 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2760482 |
cattcaaattccgatgacttgcagttgaatgaaatattattttttggagattgatgcatggaaagatctccacttatgagaatttggcaatgagagggtg |
2760383 |
T |
|
| Q |
215 |
ccagatgctctcgttgtcaataatgtagaaagttctt |
251 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
2760382 |
ccagatgctctcgttgtcaataatgtagaaagttctt |
2760346 |
T |
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