View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1949_high_4 (Length: 509)
Name: NF1949_high_4
Description: NF1949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1949_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 448; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 11 - 494
Target Start/End: Complemental strand, 44140748 - 44140265
Alignment:
| Q |
11 |
taatactatcggtctgattccatatgtgggatccattccaaaagtcgacacatgaattcagtccagtgatatattgttgaaaagggcatgttagaaagta |
110 |
Q |
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| T |
44140748 |
taataatatcggtctgattccatatgtgggatccattccaaaagtcgacacatgaattcagtccagtaatatattgttgaaaagggcatgttagaaagta |
44140649 |
T |
|
| Q |
111 |
ttatcactaacatttttcttaacatgaatgcacttcaagattatatattataaagaattaggaaagaaaataacaagttaacaactttaagtggaacaat |
210 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
44140648 |
ttatgactaacatttttcttaacatgaatgcacttcaagattatatattataaagaattagaaaagaaaataacaagttaacaactttaagtggaacaat |
44140549 |
T |
|
| Q |
211 |
ggtaaaaagcatagtccaaatgtttccattgataagaatcaaatcatctgtccttttttctcgtttccttgcttgttcctttaattgaaaattacacctt |
310 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44140548 |
ggtaaaaagcatagtccaaatgtttccattggtaagaatcaaatcatctgtccttttttctcgtttccttgcttgttcctttaattgaaaattacacctt |
44140449 |
T |
|
| Q |
311 |
tgctagaaaacaaacaactaagagagagcatgctgccccttaaaacttaaaagagacaatacttttgttcagttcacttttcaattgaaaaaacaagaga |
410 |
Q |
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| T |
44140448 |
tgctagaaaacaaacaactaagagagagcatgctgccccttaaaacttaaaagagacaatacttttgttcagttcacttttcaattgaaaaaacaagaga |
44140349 |
T |
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| Q |
411 |
agagacaagtgaataagaaagcagatctgaatcctccttaacaaccatggttcaatgctcaacgaagaaattgtattttggttt |
494 |
Q |
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| T |
44140348 |
ggagacacgtgaataagaaagcagatctgaatcctccttaacaaccatggttcaatactcaacaaagaaattgtattttggttt |
44140265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 180 - 494
Target Start/End: Complemental strand, 40889349 - 40889035
Alignment:
| Q |
180 |
ataacaagttaacaactttaagtggaacaatggtaaaaagcatagtccaaatgtttccattgataagaatcaaatcatctgtccttttttctcgtttcct |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
40889349 |
ataacaagttaacaactttaagtggaacaatggtaaaaagcatagtccaaatgtttccattgttaagaatcaaatcatctgtccttttttctcgtttcct |
40889250 |
T |
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| Q |
280 |
tgcttgttcctttaattgaaaattacacctttgctagaaaacaaacaactaagagagagcatgctgccccttaaaacttaaaagagacaatacttttgtt |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40889249 |
tgcttgttcctttaattgaaaattacacctttgctagaaaacaaacaactaagagagagcatgctgccccttaaaacttaaaagagacaatacttttgtt |
40889150 |
T |
|
| Q |
380 |
cagttcacttttcaattgaaaaaacaagagaagagacaagtgaataagaaagcagatctgaatcctccttaacaaccatggttcaatgctcaacgaagaa |
479 |
Q |
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||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40889149 |
cagttcacttttcaattgaaaaaacaagagaggagacatgtgaataagaaagcagatctgaatcctccttaacaaccatggttcaatgctcaacgaagaa |
40889050 |
T |
|
| Q |
480 |
attgtattttggttt |
494 |
Q |
| |
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||||||||||||||| |
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| T |
40889049 |
attgtattttggttt |
40889035 |
T |
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Back To:
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