View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1949_high_5 (Length: 437)
Name: NF1949_high_5
Description: NF1949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1949_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 17 - 151
Target Start/End: Original strand, 42418713 - 42418828
Alignment:
| Q |
17 |
atatgaggacgaatttggattccgacagtgaggaggaatcacggcggagcaaggcggagcaaggcggtgactggagcaatacgcatacgttggttagctg |
116 |
Q |
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| T |
42418713 |
atatgaggacgaatttggattccgacagtgaggaggaatcac----------ggcggagcaaggcggtgactggagcaatacgcatacgtt--------- |
42418793 |
T |
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| Q |
117 |
ggttccaaataaaattgtttgattgtttcgaccat |
151 |
Q |
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| T |
42418794 |
ggttcaaaataaaattgtttgattgtttcgaccat |
42418828 |
T |
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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 340 - 376
Target Start/End: Original strand, 42419834 - 42419870
Alignment:
| Q |
340 |
catttattgattttgtaaaactaataattcgaggcaa |
376 |
Q |
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| T |
42419834 |
catttattgattttgtaaaactaataattcgaggcaa |
42419870 |
T |
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