View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1949_high_7 (Length: 354)
Name: NF1949_high_7
Description: NF1949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1949_high_7 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 16 - 354
Target Start/End: Complemental strand, 10995219 - 10994881
Alignment:
| Q |
16 |
ataagcccaatcttattatctaacaaatgagacaacaatcactagaagatttagaaatcgctcttgaactagaatcagcctgcttcatctccttcacatc |
115 |
Q |
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| T |
10995219 |
ataagcccaatcttattatctaacaaatgagacaacaatcactagaagatttagaaatcgctcttgaactagaatcagcctgcttcatctccttcacatc |
10995120 |
T |
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| Q |
116 |
agagactcggtacagcgagacacccccataaaactgcttgtatcaagttgctgatgaagataaaatcctacttgcatagagctaaaagaagaagaatagt |
215 |
Q |
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| T |
10995119 |
agagactcggtacagcgagacacccccataaaactgcttgtatcaagttgctgatgaagataaaatcctacttgcatagagctaaaagaagaagaatagt |
10995020 |
T |
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| Q |
216 |
cttctttttatagaggagcgctacaaattgcattcacaattagtagttggaaatgtattcattttagataagccgaaattaattctgaagagtgcatgag |
315 |
Q |
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| T |
10995019 |
cttctttttatagaggagcgctacaaattgcattcacaattagtagttggaaatgtattcattttagataagccaaaattaattctgaagagtgcatgag |
10994920 |
T |
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| Q |
316 |
tgacatagaatactataactttataccttaaatgttgca |
354 |
Q |
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| T |
10994919 |
tgacatagaatactataactttataccttaaatgttgca |
10994881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 240 - 349
Target Start/End: Complemental strand, 10999213 - 10999105
Alignment:
| Q |
240 |
aaattgcattcacaattagtagttggaaatgtattcattttagataagccgaaattaattctgaagagtgcatgagtgacatagaatactataactttat |
339 |
Q |
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| T |
10999213 |
aaattgcattcacactcagtagttggaaatgtattcattttagata-gccgaaattaattctttcgagtgcatgaatgacatagaatactataactttat |
10999115 |
T |
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| Q |
340 |
accttaaatg |
349 |
Q |
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| T |
10999114 |
accttaaatg |
10999105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 16 - 97
Target Start/End: Complemental strand, 11000614 - 11000533
Alignment:
| Q |
16 |
ataagcccaatcttattatctaacaaatgagacaacaatcactagaagatttagaaatcgctcttgaactagaatcagcctg |
97 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
11000614 |
ataagcccaatcttattatctaacaaattagacaacaatcactagaagatttaaaaatcgctcttgaactagaatcagcctg |
11000533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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