View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1949_low_1 (Length: 670)
Name: NF1949_low_1
Description: NF1949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1949_low_1 |
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| [»] scaffold0419 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 395; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 212 - 654
Target Start/End: Complemental strand, 35006388 - 35005947
Alignment:
| Q |
212 |
gggtcttccatacatctatcacacttaatactagaagtcatcatcaacattatgactctttcttcaattgtgagaagtcttccatgaacagttttccaca |
311 |
Q |
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|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
35006388 |
gggtcttccatacatctatcacacttgatactacaagtcatcatcaacattatgactctttattcaattgtgagaagtcttccatgaacagttttccaca |
35006289 |
T |
|
| Q |
312 |
aagtatatctaattctagttggtcccttacacttccaatttttgccaaaggaattcaaactatcctcgctattaattctattacttagcatctcatatgt |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
35006288 |
aagtatatctaattctagttggtcccttacacttccaatttttgtcaaaggaattcaaacaatcctcgctattaattctattacttagcatctcatatgt |
35006189 |
T |
|
| Q |
412 |
agtttttatgaagaattctccattagaagcttgattctgatggggcacgtccgaggtgtcaggggaaggagattgaacaagatcaataacttgattcata |
511 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
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| T |
35006188 |
agtttttatgaagaattctccattaaaagcttgattctgatggggcacgtccgaggtgtc-ggggaaggaggttgaacaagatcaataacttgattcata |
35006090 |
T |
|
| Q |
512 |
tacatcaaaaatatatctcaaaattcgatcccaattctatcccgtactattgctataaaatgctataggattagtaattttaatgggaggacaagagtac |
611 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
35006089 |
tacatcaaaaatatatctcaaaattcgatcccaattccatcccgtactattgctataaaatgctataggattagtaattttaatggtaggacaagagtac |
35005990 |
T |
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| Q |
612 |
caaattggtcttcaagattagcatattgcatacaccaggatcc |
654 |
Q |
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| T |
35005989 |
caaattggtcttcaagattagcatattgcataccccaggatcc |
35005947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 35006636 - 35006436
Alignment:
| Q |
19 |
gagttagtgaaacacaccttcgggatactttcgctaaacattttgtcgctataaatatctttt---------------------aaaagtataatgaaat |
97 |
Q |
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| T |
35006636 |
gagttagtgaaacacacgttcggaatactttcgctaaacattttgtcgctataaatatcttttcccatttgtaaattgatatgtaaaagtataatgaaat |
35006537 |
T |
|
| Q |
98 |
aaattaacctaggaaggccccaataatatgaagacagacaaatcctaatgtagaatagtattaag--tgtgatggatgtatggaagacctaaaatcaatt |
195 |
Q |
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| T |
35006536 |
aaattaacctaggaaggccccaataatatgaagacagacaaatcctaatgtagactactattaagtgtgtgatagatgtatggaagactcaaaatcaatt |
35006437 |
T |
|
| Q |
196 |
t |
196 |
Q |
| |
|
| |
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|
| T |
35006436 |
t |
35006436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 294 - 459
Target Start/End: Complemental strand, 16882896 - 16882728
Alignment:
| Q |
294 |
catgaacagttttccacaaagtatatctaattctagttggtcccttacacttccaatttttgccaaa-gga--attcaaactatcctcgctattaattct |
390 |
Q |
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||||| || ||||||||||||| ||||||||||||||||||||| ||||||||| |||| |||| || || || | | ||||| |||||| || | |
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| T |
16882896 |
catgagcaattttccacaaagtggctctaattctagttggtcccttccacttccaacctttgtcaaatagaagatccagattgtcctcactattatttat |
16882797 |
T |
|
| Q |
391 |
attacttagcatctcatatgtagtttttatgaagaattctccattagaagcttgattctgatggggcac |
459 |
Q |
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| |||| ||||||||||||| | |||||||| |||| | |||||| |||||| ||||| ||||||||| |
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| T |
16882796 |
agtactcagcatctcatatgcactttttatggagaactatccattggaagctagattcaaatggggcac |
16882728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 196
Target Start/End: Original strand, 35006356 - 35006399
Alignment:
| Q |
153 |
tagtattaagtgtgatggatgtatggaagacctaaaatcaattt |
196 |
Q |
| |
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|||||| ||||||||| ||||||||||||||| ||||||||||| |
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| T |
35006356 |
tagtatcaagtgtgatagatgtatggaagacccaaaatcaattt |
35006399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 599 - 636
Target Start/End: Original strand, 14591033 - 14591070
Alignment:
| Q |
599 |
aggacaagagtaccaaattggtcttcaagattagcata |
636 |
Q |
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|||||||||| ||||||||||||||||||| ||||||| |
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| T |
14591033 |
aggacaagaggaccaaattggtcttcaagactagcata |
14591070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 477 - 582
Target Start/End: Original strand, 44103133 - 44103237
Alignment:
| Q |
477 |
aaggagattgaacaagatcaataacttgattcatatacatcaaaaatatatctcaaaattcgatcccaattctatcccgtactattgctataaaatgcta |
576 |
Q |
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|||||| |||||||||||||||||||| |||||||||||| | ||||||||| |||||| | |||||||| ||||| ||||| | ||||||||||| |
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| T |
44103133 |
aaggaggttgaacaagatcaataacttcattcatatacat-atgaatatatctaaaaatttgctcccaatttcatcccaagctattaccataaaatgcta |
44103231 |
T |
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| Q |
577 |
taggat |
582 |
Q |
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||||| |
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| T |
44103232 |
caggat |
44103237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 3974614 - 3974661
Alignment:
| Q |
13 |
aatattgagttagtgaaacacaccttcgggatactttcgctaaacatt |
60 |
Q |
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||||||||||||||||||||||| |||| |||| |||||||||||||| |
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| T |
3974614 |
aatattgagttagtgaaacacacattcgagatattttcgctaaacatt |
3974661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0419 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0419
Description:
Target: scaffold0419; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 266 - 342
Target Start/End: Complemental strand, 746 - 670
Alignment:
| Q |
266 |
actctttcttcaattgtgagaagtcttccatgaacagttttccacaaagtatatctaattctagttggtcccttaca |
342 |
Q |
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|||||||||||| ||||||||||| || | |||| ||||||||||| | |||| ||||||||||||||||||| |
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| T |
746 |
actctttcttcatttgtgagaagtttttcggaaacaattttccacaaattggttctatttctagttggtcccttaca |
670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 266 - 342
Target Start/End: Complemental strand, 28874080 - 28874004
Alignment:
| Q |
266 |
actctttcttcaattgtgagaagtcttccatgaacagttttccacaaagtatatctaattctagttggtcccttaca |
342 |
Q |
| |
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|||||||||||| ||||||||||| || | |||| ||||||||||| | |||| ||||||||||||||||||| |
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| T |
28874080 |
actctttcttcatttgtgagaagtttttcggaaacaattttccacaaattggttctatttctagttggtcccttaca |
28874004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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