View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1949_low_10 (Length: 311)
Name: NF1949_low_10
Description: NF1949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1949_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-144; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 26203466 - 26203172
Alignment:
| Q |
1 |
ttccacatttggtaggtttatagattacattgatttactgatatgaataatcaaataaaactgcattttgaattaatcatgtacttgttgaaagaaagaa |
100 |
Q |
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| T |
26203466 |
ttccacatttggtaggtttatagattacattgatttactgatatgaataatcaaataaaactgcactttgaattaatcatgtacttgttgaaagaaagaa |
26203367 |
T |
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| Q |
101 |
aaaacactgacccctatagttgtattttgggacactgatactactaaacaggcaaagaattgacaagctatgaaaaaccaaagcctaatataggaatcca |
200 |
Q |
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| T |
26203366 |
aaaacactgacccctatagttgtattttgggacactgatactactaaacaggcaaagaattgacaagctatgaaaaaccaaagcctaatataggaatcca |
26203267 |
T |
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| Q |
201 |
cagatatgtgtttgtcctattcaagcnnnnnnngatgaagaagcactcaattgttgcacctttttcaagggatcactttaacacacgtgcctttt |
295 |
Q |
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| T |
26203266 |
cagatatgtgtttgtcctattcaagcaagaaaaggggaagaagcactcaattgttgctcctttttcaagggatcactttaacacacgtgcctttt |
26203172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 26196381 - 26196333
Alignment:
| Q |
81 |
gtacttgttgaaagaaagaaaaaacactgacccctatagttgtattttg |
129 |
Q |
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| T |
26196381 |
gtacttgttgaaagaaagaaaatacactgagccctatagtaatattttg |
26196333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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