View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1949_low_17 (Length: 236)
Name: NF1949_low_17
Description: NF1949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1949_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 10994843 - 10994623
Alignment:
| Q |
1 |
tttcaataaccttttgagcattttcaacagaattatcagaccaaaagattgaaagtaaaaccatcattatttaaagtaacttctaaaataaagaaatgtg |
100 |
Q |
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| T |
10994843 |
tttcaataaccttttgagcattttcaacagaattatcagaccaaaagattgaaagtaaaaccatcattatttaaagtaacttctaaaataaagaaatgtg |
10994744 |
T |
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| Q |
101 |
ttaagccacgatctacattcttatttgcactagactggcatggagaagaggctttaaaactttccatatattgagtctgattcagacaggtggcaagaag |
200 |
Q |
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| T |
10994743 |
ttaagccacgatctacattcttatttgcactagactggcatggagaagaggctttaaaactttccatatattgagtctgattcagacaggtggcaagaag |
10994644 |
T |
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| Q |
201 |
atttctttcggatgagtgttc |
221 |
Q |
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| T |
10994643 |
atttctttcggatgagtgttc |
10994623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 31 - 119
Target Start/End: Complemental strand, 10999066 - 10998978
Alignment:
| Q |
31 |
aattatcagaccaaaagattgaaagtaaaaccatcattatttaaagtaacttctaaaataaagaaatgtgttaagccacgatctacatt |
119 |
Q |
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| T |
10999066 |
aattataagatcaaaagattgaaattaacaccagcattgtttagggtaacttttaaaataaagaaatgtgttaaaccacaatctacatt |
10998978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 10898793 - 10898752
Alignment:
| Q |
1 |
tttcaataaccttttgagcattttcaacagaattatcagacc |
42 |
Q |
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| T |
10898793 |
tttcaataaccttgcgagcattttcaacagagttatcagacc |
10898752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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