View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1949_low_18 (Length: 231)
Name: NF1949_low_18
Description: NF1949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1949_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 67; Significance: 6e-30; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 115 - 210
Target Start/End: Complemental strand, 36007692 - 36007593
Alignment:
| Q |
115 |
acaaatattacctgataacacaaaggcaactgaaac----aaaaaatgtataatccaagacaaaacatttcacaatacttcttttccatgacaaccttct |
210 |
Q |
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| T |
36007692 |
acaaatattacctgataacacaaaggcaattgaaaccgaaacaaaatgtataatccaagacaaaacatttcagaatacttctgttccatgacaaccttct |
36007593 |
T |
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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 36003337 - 36003299
Alignment:
| Q |
2 |
ttaaccgtccccaaactcgcattctattcaagtctatag |
40 |
Q |
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| T |
36003337 |
ttaaccgtcctcaaactcgcattctattcaagtctatag |
36003299 |
T |
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