View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1949_low_2 (Length: 578)
Name: NF1949_low_2
Description: NF1949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1949_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 147 - 559
Target Start/End: Original strand, 27643059 - 27643471
Alignment:
| Q |
147 |
aatgcaattcaacgttggtagaaggatatgagtttcatctccctcagcttagccacccagaatctgatactcttaaacgtatctgcatactcaaagaacc |
246 |
Q |
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|||||||||||| ||| ||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27643059 |
aatgcaattcaatgtttgtagacgggtatgagtttcatctccctcaacttagccacccagaatctgatactcttaaacgtatctgcatactcaaagaacc |
27643158 |
T |
|
| Q |
247 |
catagttcttactcttgttcatactagatacatgttgaaactcaaaccgcagaaatggcagtgttgcttcaaaggaagcaatttcctccaatttggtctt |
346 |
Q |
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|||| | |||||| |||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
27643159 |
cataatccttacttttgttcatactagatacatgttgaaactgaaaccgcagaactggcaccgttgcttcaaaggaagcaatttcctccaatttggtctt |
27643258 |
T |
|
| Q |
347 |
atgaagcccatattcctccacaatcaagtcccaaatctcacccttatcacgcattaactccgccaaatcaaactcttccttgtcattcaactccacaaac |
446 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
27643259 |
atgaagcccatattcctccacaatcaggtcccaaatctcacccttatcacgcattaactccaccaaatcaaactcttccttgtcattcaactccacaaac |
27643358 |
T |
|
| Q |
447 |
ttaacatcaaaaacctcactaagcaacatccacatactcttccaagtgaaaacatcaccatttgtgcaattgaacgcttggttcttcacatcttctgtaa |
546 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
27643359 |
ttaacattaaaaacctcactaagcaacatccacatactcttccaagtgaaaacatcaccatttgtgcaattgaaagcttggttcttcgcatcttctgtaa |
27643458 |
T |
|
| Q |
547 |
ctgcagcccacac |
559 |
Q |
| |
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||||||||||||| |
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| T |
27643459 |
ctgcagcccacac |
27643471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 160 - 532
Target Start/End: Complemental strand, 50247819 - 50247447
Alignment:
| Q |
160 |
gttggtagaaggatatgagtttcatctccctcagcttagccacccagaatctgatactcttaaacgtatctgcatactcaaagaacccatagttcttact |
259 |
Q |
| |
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|||||||| ||| ||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||| || |||||||| | ||||| |
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| T |
50247819 |
gttggtaggagggtataagtttcatctccctcagcttagccacccagagtttgatactcttaaacgtatcagcatactctaaaaacccataatctttact |
50247720 |
T |
|
| Q |
260 |
cttgttcatactagatacatgttgaaactcaaaccgcagaaatggcagtgttgcttcaaaggaagcaatttcctccaatttggtcttatgaagcccatat |
359 |
Q |
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|||||||||||||||||||||||||||||||||||| | || ||||| | ||||||||| |||||||||||| ||| ||||||||||||||||||||| |
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| T |
50247719 |
cttgttcatactagatacatgttgaaactcaaaccgtacaactggcaccatggcttcaaagcaagcaatttccttcaacttggtcttatgaagcccatat |
50247620 |
T |
|
| Q |
360 |
tcctccacaatcaagtcccaaatctcacccttatcacgcattaactccgccaaatcaaactcttccttgtcattcaactccacaaacttaacatcaaaaa |
459 |
Q |
| |
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| ||| |||||||||||||||| ||||||||| |||||||| ||||| | |||||||||||| || |||| |||||| ||||||| ||||||||||| |
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| T |
50247619 |
ttctctacaatcaagtcccaaacctcacccttgtcacgcatcaactcaatgatatcaaactcttctttatcatccaactcaacaaactcaacatcaaaaa |
50247520 |
T |
|
| Q |
460 |
cctcactaagcaacatccacatactcttccaagtgaaaacatcaccatttgtgcaattgaacgcttggttctt |
532 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| || ||||||||||| |
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|
| T |
50247519 |
cctcactaagcaacatccacatactcttccaagtgaaaatgtcaccgtttgtacaattaaatgcttggttctt |
50247447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 154 - 532
Target Start/End: Complemental strand, 50254962 - 50254584
Alignment:
| Q |
154 |
ttcaacgttggtagaaggatatgagtttcatctccctcagcttagccacccagaatctgatactcttaaacgtatctgcatactcaaagaacccatagtt |
253 |
Q |
| |
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||||| ||| ||||| || |||||| ||||||||||||||||| |||||||||| | | ||| |||||||| || ||||||||||| ||| |||| || |
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| T |
50254962 |
ttcaatgttcgtagatgggtatgagattcatctccctcagcttcatcacccagaatttcacactattaaacgtctcagcatactcaaaaaactcataatt |
50254863 |
T |
|
| Q |
254 |
cttactcttgttcatactagatacatgttgaaactcaaaccgcagaaatggcagtgttgcttcaaaggaagcaatttcctccaatttggtcttatgaagc |
353 |
Q |
| |
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|||||||| ||||||||||||||| ||||||||||||| || | || ||||| || ||||| ||||||||||||||||||||||||||||||| |
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| T |
50254862 |
tttactcttattcatactagatacaagttgaaactcaaatcgaaaaactggcaccaaggcatcaaaacaagcaatttcctccaatttggtcttatgaagt |
50254763 |
T |
|
| Q |
354 |
ccatattcctccacaatcaagtcccaaatctcacccttatcacgcattaactccgccaaatcaaactcttccttgtcattcaactccacaaacttaacat |
453 |
Q |
| |
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||||| |||||||||||| ||||||| |||||||||||||||||| |||| | ||||||||||||||||||| |||| ||| ||||||||||||||| |
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| T |
50254762 |
ccatactcctccacaatctgatcccaaacctcacccttatcacgcataaactgcaccaaatcaaactcttccttttcatccaaatccacaaacttaacag |
50254663 |
T |
|
| Q |
454 |
caaaaacctcactaagcaacatccacatactcttccaagtgaaaacatcaccatttgtgcaattgaacgcttggttctt |
532 |
Q |
| |
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||||| || || ||||| | |||||||||||||||| | |||||| ||||||||||||||||| |||||||||||||| |
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| T |
50254662 |
caaaagtcttacaaagcaccttccacatactcttccatgcgaaaacgtcaccatttgtgcaattaaacgcttggttctt |
50254584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 14 - 210
Target Start/End: Original strand, 27646129 - 27646328
Alignment:
| Q |
14 |
gaacatacagctcaatggaagtagtccctgcagttgcgtgcagatgatactggtttatagnnnnnnnn---tgactgttattaaaagtttttgtggtata |
110 |
Q |
| |
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||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
27646129 |
gaacatacagctcaatgaaagtagtctctgcagttgcgtgcagatgatactggtttatagaagaaaaaaaatgactgttattaaaagtttttgtggtata |
27646228 |
T |
|
| Q |
111 |
cagatgaaataaaagtcgaacaatattattacagataatgcaattcaacgttggtagaaggatatgagtttcatctccctcagcttagccacccagaatc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
27646229 |
cagatgaaataaaagtcgaacaatattattacagataatgcaattcaatgttggtagaagggtatgagtttcatctccctcagcttagccacccagaatc |
27646328 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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