View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1949_low_3 (Length: 534)
Name: NF1949_low_3
Description: NF1949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1949_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 59 - 521
Target Start/End: Complemental strand, 27513794 - 27513349
Alignment:
| Q |
59 |
cgtagcttgcagagaagaaggtgccgaagaccttgaaaata-------agttgatgaaactatctgcaagcctgatgatgaagaggttgagttttttgaa |
151 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
27513794 |
cgtagcttccagagaagaaggtgccgaagaccttgaaaatacaagggaagttgatgaaactacctgcaagcctgatgatgaagaggttgagttttttgaa |
27513695 |
T |
|
| Q |
152 |
ttttgattgttttgaactaatttgaatatgaatagattagattccaatgttgtgagtgtagaatatatattttggttattggtataatcatttgttataa |
251 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
27513694 |
ttttgagtgttttgaactaatttgaatatgaatagattagatttcaatgatgtgagtgtagaatatatattttggttattggtatagtcatttgttataa |
27513595 |
T |
|
| Q |
252 |
tgtgaggtttaaattaggattttgaagacaaaaataaactatgatatgttacaaattccagagcatgatgattaacgatcctctaaccttctttcaacat |
351 |
Q |
| |
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|||||||||| ||||||||||||||||| |||||| |||||||||||| | | |||||||||||||||||||||||||||| |||||||||||||| ||| |
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| T |
27513594 |
tgtgaggtttgaattaggattttgaagagaaaaatcaactatgatatgctgctaattccagagcatgatgattaacgatccactaaccttctttcaccat |
27513495 |
T |
|
| Q |
352 |
taacgatttcagattctcaccctaagccttctgattctcctcaatctcaatcattgagtcttaaaggttcaattacagaaaccatccgattcaaaaacac |
451 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27513494 |
taaagatttcagattctcaccctaagccttctgattc------------accattgagtcttaaaggttcaattacagaaaccatccgattcaaaaacac |
27513407 |
T |
|
| Q |
452 |
taatccgttttgattagtgattcgaaaaagtttgatttcatcttgaaccgcatctcattgttttcatctc |
521 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
27513406 |
taatccgt------------ttcgaaaaagtttgatttcatcttgaaccgcatctcatcgttttcatctc |
27513349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 99 - 299
Target Start/End: Original strand, 8675163 - 8675345
Alignment:
| Q |
99 |
aagttgatgaaactatctgcaagcctgatgatgaagaggttgagttttttgaattttgattgttttgaactaatttgaatatgaatagattagattccaa |
198 |
Q |
| |
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|||||||||| ||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||| |
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| T |
8675163 |
aagttgatgagactgtttgcaagcctgatgatgaagaggttgagttttttaaattttgattgttttgacctaatttcaatatgc---------------- |
8675246 |
T |
|
| Q |
199 |
tgttgtgagtgtagaatatatattttggttattggtataatcatttgttataatgtgaggtttaaattaggattttgaagac-aaaaataaactatgata |
297 |
Q |
| |
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|||||||||||||||||||||||| |||||| ||||||||||||||||| |||||| || ||||||||||||||| || ||||||||||||||||| |
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| T |
8675247 |
---tgtgagtgtagaatatatattttgtttattgttataatcatttgttatactgtgagattataattaggattttgaaaacaaaaaataaactatgata |
8675343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 135; Significance: 4e-70; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 242 - 521
Target Start/End: Complemental strand, 24036578 - 24036304
Alignment:
| Q |
242 |
tttgttataatgtgaggtttaaattaggattttgaagacaaaaa-taaactatgatatgttacaaattccagagcatgatgattaacgatcctctaacct |
340 |
Q |
| |
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||||||||| |||||| ||| ||||||||||||||||| ||||| |||||||||||||| | ||||||||||| |||||||||||||| | | |||| |
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| T |
24036578 |
tttgttatactgtgagatttgaattaggattttgaagagaaaaaataaactatgatatgatgttaattccagagcctgatgattaacgattcacaaacca |
24036479 |
T |
|
| Q |
341 |
tctttcaacattaacgatttcagattctcaccctaagccttctgattctcctcaatctcaatcattgagtcttaaaggttcaattacagaaaccatccga |
440 |
Q |
| |
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|| |||| |||||||||||||||||||||| || |||||| ||||||||||| ||| |||||||||||||||||||||| ||||||| || || |
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| T |
24036478 |
tccttcaccattaacgatttcagattctcatcc-aagcctgttgattctcctccatc------attgagtcttaaaggttcaatttcagaaactttctga |
24036386 |
T |
|
| Q |
441 |
ttcaaaaacactaatccgttttgattagtgattcga-aaaagtttgatttcatcttgaaccgcatctcattgttttcatctc |
521 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
24036385 |
ttcaaaaacactaatcagttttgattagtgattcgaaaaaagtttgatttcatcttgaaccgcatctcatagttttcatctc |
24036304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 98 - 250
Target Start/End: Complemental strand, 24036919 - 24036763
Alignment:
| Q |
98 |
taagttgatgaaactatctgcaagcc----tgatgatgaagaggttgagttttttgaattttgattgttttgaactaa-tttgaatatgaatagattaga |
192 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||| |||| |||| |||| |||| || ||| |
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| T |
24036919 |
taagttgatgaaactatctgcaagccatcctgatgatgaagaggttgagtttttt-agttttgattgttttgatctaaatttgtatataaataaatcaga |
24036821 |
T |
|
| Q |
193 |
ttccaatgttgtgagtgtagaatatatattttggttattggtataatcatttgttata |
250 |
Q |
| |
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|| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24036820 |
tttcaatgttttgagtgtagaatatatattttggttattggtataatcatttgttata |
24036763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 99 - 222
Target Start/End: Original strand, 39210058 - 39210165
Alignment:
| Q |
99 |
aagttgatgaaactatctgcaagcctgatgatgaagaggttgagttttttgaattttgattgttttgaactaatttgaatatgaatagattagattccaa |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
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| T |
39210058 |
aagttgatgaaactatctgcaagcctgatgatgaagaggttgattttttt----------------gaactaatttgaatatgaatagattagattccaa |
39210141 |
T |
|
| Q |
199 |
tgttgtgagtgtagaatatatatt |
222 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
39210142 |
tgttgtgagtgtagaatatatatt |
39210165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 100 - 212
Target Start/End: Complemental strand, 38950885 - 38950770
Alignment:
| Q |
100 |
agttgatgaaactatctgcaagcctgatgatgaagaggttgagttttttg------aattttgattgttttgaactaatttgaatatgaatagattagat |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||| |
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| T |
38950885 |
agttgatgaaactatctgcaagcctgatga---agaggttgagtttttttttttttaattttgattgttttgacctaatttgaatatgattagattagat |
38950789 |
T |
|
| Q |
194 |
tccaatgttgtgagtgtag |
212 |
Q |
| |
|
| ||| ||||||||||||| |
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|
| T |
38950788 |
ttcaaagttgtgagtgtag |
38950770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 99 - 193
Target Start/End: Original strand, 9461195 - 9461298
Alignment:
| Q |
99 |
aagttgatgaaactatctgcaagcctgatgatgaagaggttgagttttt---------tgaattttgattgttttgaactaatttgaatatgaatagatt |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||| |||||| |
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| T |
9461195 |
aagttgatgaaactatctgcaagcctgatgatgaagaggttgagtttttttttttttgttaattttgattgttttgacctaatttgaatatgattagatt |
9461294 |
T |
|
| Q |
190 |
agat |
193 |
Q |
| |
|
|||| |
|
|
| T |
9461295 |
agat |
9461298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 150 - 217
Target Start/End: Complemental strand, 18331945 - 18331878
Alignment:
| Q |
150 |
aattttgattgttttgaactaatttgaatatgaatagattagattccaatgttgtgagtgtagaatat |
217 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||||||| |||| ||||||||||||||||| |
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|
| T |
18331945 |
aattttgattgttttgacataatttgaatatgattagattagatttcaatattgtgagtgtagaatat |
18331878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 18332028 - 18331979
Alignment:
| Q |
99 |
aagttgatgaaactatctgcaagcctgatgatgaagaggttgagtttttt |
148 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
18332028 |
aagttgatgaaactatctacaagcctgatgatgaagaggttgagtttttt |
18331979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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