View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1949_low_6 (Length: 357)
Name: NF1949_low_6
Description: NF1949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1949_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 1594860 - 1594520
Alignment:
| Q |
1 |
ttagggtgtctaagatcagcaatcattttcactatctttgcaaattcctccttagtgaatggtttcaagtcccttaacctctttacaacaatggtaggtc |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1594860 |
ttagggtgtctaagatcagcaatcattttcactatctttgcaaattcctccttagtgaatggtttcaagtcccttaacctctttacaacaatggtaggtc |
1594761 |
T |
|
| Q |
101 |
cattattcaacattgccttataactatttcccataattccatgacctaatgcctcagcagaagctctaagaagttctcccatttgaaattttgtctcatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1594760 |
cattattcaacattgccttataactatttcccataattccatgacctaatgcctcagcagaagctctaagaagttctcccatttgaaattttgtctcatc |
1594661 |
T |
|
| Q |
201 |
tttaaagaacattaactcctttctctcttctactgtcatcattgttgttccttctcctatctctatcctcttctcaatacttgtttcaacatctttctct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1594660 |
tttaaagaacattaactcctttctctcttctactgtcatcattgttgttccttctcctatctctatcctcttctcaatacttgtttcaacatctttctct |
1594561 |
T |
|
| Q |
301 |
tgttcatgaaatgtgttaatgtgtcctttgactattctatt |
341 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
1594560 |
tgttcatgaaatgtgttaatgtgtcctttgactattctatt |
1594520 |
T |
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