View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19500_high_1 (Length: 383)
Name: NF19500_high_1
Description: NF19500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19500_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 19 - 202
Target Start/End: Complemental strand, 18648291 - 18648108
Alignment:
| Q |
19 |
gttgtgatcaaagtcgcaaacatttctgtttataaaactccgcaattgcaacacaaccacggcttatttattcattagtcattctgatcaactgtttgag |
118 |
Q |
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| T |
18648291 |
gttgtgatcaaagtcgcaaacatttctgtttataaaactccgcaattgcaacacaaccacggcttatttattcattagtcattctgatcaactgtttgag |
18648192 |
T |
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| Q |
119 |
ctaattgaactacaatttggaggttttacgggctcaatcactcgtcgagtttataaaacattcttgtaaaccaagttagaaaat |
202 |
Q |
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| T |
18648191 |
ctaattgaactacaatttggaggttttacgggctcaatcactcgtcgagtttataaaacattcttgtaaaccaagttagaaaat |
18648108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 239 - 365
Target Start/End: Complemental strand, 18645943 - 18645817
Alignment:
| Q |
239 |
gctccatagcacaaggaatgttttctatcacccaaccagatgttttaacaaacaagaacaagactttgattctgtcctgtaactttgttaaacaaaaaag |
338 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18645943 |
gctccatagcacaaggaatgttttctatcacccaaccagatgttttaacaaacaagaacaagactttgattctgtcctgtaactttgttaaacaaaaaag |
18645844 |
T |
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| Q |
339 |
tgatggttctgttgttgagtttctgtg |
365 |
Q |
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| T |
18645843 |
tgatggttctgttgttgagtttctgtg |
18645817 |
T |
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